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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 972.0
Min RPKM: 317.3
Std RPKM: 132.5
Median RPKM: 546.8
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
972.0
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
890.2
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
872.5
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
837.4
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
824.7
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
802.7
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
788.1
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
785.6
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
780.9
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
767.5
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
753.6
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
742.9
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
742.6
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
736.3
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
722.3
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
721.9
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
694.9
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
691.2
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
690.0
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
673.5
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
662.0
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
653.0
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
635.8
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
632.0
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
630.2
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
627.3
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
626.2
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
623.5
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
618.7
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
618.3
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
603.9
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
603.3
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
601.6
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
600.1
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
599.3
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
594.4
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
591.8
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
588.9
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
580.1
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
572.3
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
570.1
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
564.6
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
563.3
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
556.8
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
554.2
GTEX-QCQG-1226-SM-48U23
50-59 years, female
553.3
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
548.4
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
547.5
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
546.1
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
542.0
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
531.7
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
531.3
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
526.1
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
524.8
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
522.5
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
521.3
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
520.8
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
520.5
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
519.3
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
519.0
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
513.1
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
509.8
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
509.4
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
503.9
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
502.4
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
502.3
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
496.3
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
491.4
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
483.2
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
483.1
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
481.1
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
480.7
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
479.8
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
475.2
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
475.2
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
470.0
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
460.7
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
459.9
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
459.6
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
455.8
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
444.2
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
439.0
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
432.6
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
431.7
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
424.6
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
424.3
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
413.6
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
397.7
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
395.9
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
388.0
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
380.0
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
368.1
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
366.5
GTEX-S341-1226-SM-4AD5S
40-49 years, female
343.2
GTEX-11I78-2026-SM-5987C
50-59 years, female
342.5
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
317.3
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.