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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 693.0
Min RPKM: 159.4
Std RPKM: 113.4
Median RPKM: 354.1
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
693.0
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
666.9
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
577.4
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
573.3
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
563.6
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
548.2
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
545.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
544.1
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
539.8
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
534.2
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
520.7
GTEX-1192X-2526-SM-59868
50-59 years, male
518.6
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
515.2
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
511.7
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
509.2
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
495.7
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
495.2
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
491.5
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
490.7
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
470.4
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
465.5
GTEX-13O61-1326-SM-5KM31
60-69 years, male
461.3
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
451.7
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
442.4
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
442.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
438.4
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
433.9
GTEX-117YX-0326-SM-5GICL
50-59 years, male
432.2
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
420.5
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
403.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
403.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
399.8
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
395.1
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
394.2
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
390.9
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
385.8
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
385.5
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
381.9
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
377.2
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
372.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
370.7
GTEX-13111-1426-SM-5DUW3
50-59 years, male
370.3
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
360.4
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
355.4
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
352.8
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
351.6
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
347.7
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
344.0
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
338.6
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
337.4
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
334.2
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
333.9
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
330.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
329.5
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
325.9
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
325.6
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
321.4
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
318.5
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
316.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
313.9
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
313.0
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
312.7
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
311.9
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
309.5
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
305.3
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
295.0
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
294.9
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
293.8
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
291.4
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
282.0
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
272.3
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
271.4
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
267.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
267.4
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
263.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
262.0
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
258.5
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
252.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
251.7
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
242.2
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
240.8
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
220.6
GTEX-1122O-1326-SM-5H11F
60-69 years, female
202.4
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
192.0
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
187.1
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
184.8
GTEX-ZTSS-0926-SM-59865
40-49 years, male
181.4
GTEX-111YS-1426-SM-5GID8
60-69 years, male
159.4
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.