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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 321.4
Min RPKM: 121.2
Std RPKM: 38.6
Median RPKM: 194.5
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
321.4
GTEX-1192X-2526-SM-59868
50-59 years, male
306.8
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
294.4
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
280.0
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
264.9
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
262.0
GTEX-117YX-0326-SM-5GICL
50-59 years, male
255.7
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
248.1
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
246.8
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
246.2
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
243.5
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
240.3
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
234.7
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
231.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
230.6
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
229.2
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
226.8
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
224.0
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
224.0
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
222.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
221.5
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
220.7
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
219.9
GTEX-13111-1426-SM-5DUW3
50-59 years, male
217.2
GTEX-13113-1226-SM-5EGHT
60-69 years, female
216.2
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
216.1
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
215.9
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
214.5
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
214.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
212.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
211.8
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
210.4
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
208.5
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
208.5
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
208.3
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
207.6
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
206.9
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
206.5
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
205.4
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
205.4
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
204.9
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
203.8
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
196.5
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
194.7
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
194.2
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
194.0
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
193.8
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
193.8
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
192.1
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
191.6
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
190.2
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
190.1
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
187.4
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
187.2
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
185.1
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
181.7
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
181.0
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
179.6
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
179.3
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
178.5
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
178.3
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
177.1
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
175.9
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
175.1
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
174.9
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
173.3
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
172.0
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
171.6
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
170.0
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
168.6
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
166.3
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
165.8
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
164.5
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
162.6
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
159.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
158.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
157.7
GTEX-1122O-1326-SM-5H11F
60-69 years, female
155.2
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
155.2
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
152.5
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
150.4
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
149.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
144.1
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
143.4
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
139.7
GTEX-111YS-1426-SM-5GID8
60-69 years, male
127.5
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
124.9
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
121.2
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.