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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 252.7
Min RPKM: 33.5
Std RPKM: 42.5
Median RPKM: 113.1
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
252.7
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
225.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
209.3
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
184.0
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
181.6
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
181.5
GTEX-1192X-2526-SM-59868
50-59 years, male
180.8
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
180.1
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
174.8
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
170.8
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
169.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
161.7
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
161.7
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
157.8
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
156.9
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
153.4
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
153.3
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
148.4
GTEX-13O61-1326-SM-5KM31
60-69 years, male
146.7
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
143.1
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
140.9
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
140.1
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
139.0
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
139.0
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
138.6
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
136.5
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
135.7
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
132.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
131.7
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
129.4
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
129.3
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
129.0
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
128.8
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
125.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
125.2
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
125.0
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
124.6
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
123.4
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
122.6
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
116.4
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
115.6
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
115.4
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
114.0
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
113.4
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
112.7
GTEX-117YX-0326-SM-5GICL
50-59 years, male
112.2
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
110.2
GTEX-13111-1426-SM-5DUW3
50-59 years, male
107.7
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
107.2
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
105.1
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
102.8
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
101.5
GTEX-13113-1226-SM-5EGHT
60-69 years, female
101.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
100.7
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
100.0
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
99.8
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
99.6
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
99.3
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
98.7
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
97.6
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
95.2
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
92.5
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
91.7
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
90.4
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
87.9
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
83.0
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
82.0
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
81.0
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
79.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
78.3
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
77.9
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
77.6
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
75.2
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
73.3
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
69.6
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
68.5
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
68.1
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
67.2
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
62.4
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
59.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
54.0
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
51.6
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
50.9
GTEX-1122O-1326-SM-5H11F
60-69 years, female
50.4
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
48.1
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
48.1
GTEX-ZTSS-0926-SM-59865
40-49 years, male
46.5
GTEX-111YS-1426-SM-5GID8
60-69 years, male
33.5
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.