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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 3388.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 5405
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 2746.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 4646.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 4867.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1739.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 3223.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 7105.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2193.8
Min RPKM: 65.0
Std RPKM: 488.9
Median RPKM: 595.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
2193.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
1871.7
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
1837.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1821.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
1770.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
1753.8
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
1680.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
1617.4
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
1519.4
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
1519.1
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
1495.9
GTEX-Q734-0326-SM-48U15
40-49 years, female
1490.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
1461.1
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
1436.6
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
1414.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
1372.0
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
1362.3
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
1273.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
1271.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
1246.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
1224.5
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
1191.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
1188.0
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
1170.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
1168.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
1128.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
1122.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
1103.0
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
1083.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
1071.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
1051.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
1012.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
932.3
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
924.6
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
887.3
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
882.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
866.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
866.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
854.0
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
851.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
843.1
GTEX-1399T-0826-SM-5IFES
60-69 years, male
835.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
830.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
826.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
812.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
786.1
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
782.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
773.2
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
761.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
754.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
751.1
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
734.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
733.9
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
711.5
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
696.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
669.1
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
652.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
640.4
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
604.0
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
595.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
583.3
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
575.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
543.6
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
526.8
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
517.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
492.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
442.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
425.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
422.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
419.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
399.8
GTEX-RU72-1426-SM-46MUF
50-59 years, female
395.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
385.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
382.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
378.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
365.5
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
344.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
339.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
338.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
329.5
GTEX-REY6-1226-SM-48FDR
60-69 years, male
327.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
321.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
310.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
308.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
306.8
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
306.4
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
295.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
293.8
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
292.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
292.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
289.5
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
286.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
285.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
284.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
284.3
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
281.7
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
278.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
278.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
273.6
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
271.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
270.4
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
261.5
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
261.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
260.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
259.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
240.0
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
221.0
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
214.1
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
207.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
207.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
205.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
203.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
186.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
183.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
177.1
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
175.7
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
171.5
GTEX-12696-0826-SM-5EGGE
60-69 years, male
167.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
65.0
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.