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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 4368.6
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1661
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 1765.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 4002.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 2622.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 2458.6
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 1968
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 4116.9
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2511.4
Min RPKM: 75.8
Std RPKM: 470.7
Median RPKM: 773.3
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
2511.4
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
2188.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
2080.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
2059.5
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
1933.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
1900.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
1869.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
1747.7
GTEX-1399T-0826-SM-5IFES
60-69 years, male
1715.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
1557.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
1438.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
1436.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
1398.6
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
1370.7
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
1358.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
1185.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
1153.9
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
1150.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
1142.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
1137.8
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
1107.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
1098.1
GTEX-QEL4-1226-SM-447A4
50-59 years, male
1078.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
1067.1
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
1066.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
1051.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
1025.5
GTEX-Q734-0326-SM-48U15
40-49 years, female
1025.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
1023.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
1007.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
1003.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
1003.3
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
995.6
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
988.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
983.1
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
968.9
GTEX-11GSP-0626-SM-5986T
60-69 years, female
941.3
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
930.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
913.0
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
907.3
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
897.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
894.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
889.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
885.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
884.1
GTEX-P78B-1326-SM-3P611
40-49 years, female
877.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
870.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
868.5
GTEX-11ZUS-2526-SM-59872
30-39 years, male
867.3
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
864.8
GTEX-YECK-1926-SM-4W21H
60-69 years, male
823.3
GTEX-13113-1326-SM-5GCOI
60-69 years, female
820.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
817.4
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
807.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
805.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
800.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
798.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
784.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
774.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
773.3
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
751.4
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
742.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
728.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
704.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
689.9
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
686.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
682.1
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
674.6
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
673.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
655.7
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
655.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
644.8
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
633.3
GTEX-S33H-1626-SM-4AD68
30-39 years, male
626.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
622.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
609.2
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
595.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
595.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
590.9
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
575.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
570.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
555.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
551.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
532.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
521.7
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
506.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
506.3
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
495.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
492.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
491.1
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
479.8
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
474.0
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
473.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
470.9
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
433.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
431.7
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
427.2
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
410.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
349.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
339.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
322.5
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
318.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
312.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
300.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
296.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
281.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
268.7
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
266.4
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
235.8
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
225.3
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
220.6
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
213.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
207.9
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
177.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
176.2
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
169.1
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
156.0
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
132.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
75.8
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.