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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 936.9
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 1143.3
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 739.5
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 975.3
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 966.2
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 860
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 1815.8
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 1250
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 1599.4
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 563.8
Min RPKM: 235.8
Std RPKM: 59.5
Median RPKM: 371.5
GTEX-YEC4-1526-SM-4W1YU
40-49 years, male
563.8
GTEX-YFCO-1726-SM-4W21S
40-49 years, male
551.3
GTEX-ZTSS-1526-SM-51MTC
40-49 years, male
515.2
GTEX-11EQ9-1926-SM-5PNVV
30-39 years, male
495.5
GTEX-ZDYS-1326-SM-5IJFF
50-59 years, male
487.1
GTEX-ZQUD-2026-SM-51MSM
30-39 years, male
483.1
GTEX-ZTX8-1126-SM-51MRM
20-29 years, male
482.9
GTEX-ZPU1-2126-SM-57WED
40-49 years, male
481.1
GTEX-TKQ1-0926-SM-4DXU2
30-39 years, male
478.7
GTEX-ZV7C-2026-SM-5NQ8F
50-59 years, male
466.2
GTEX-OXRL-2126-SM-3NM98
50-59 years, male
459.2
GTEX-ZT9W-2226-SM-57WFU
50-59 years, male
454.6
GTEX-132QS-1226-SM-5P9GD
60-69 years, male
453.6
GTEX-11P82-1526-SM-5BC5M
20-29 years, male
448.3
GTEX-13O61-2026-SM-5J2M6
60-69 years, male
448.0
GTEX-ZZ64-1126-SM-5GZXY
20-29 years, male
447.4
GTEX-139TT-2226-SM-5LZWO
60-69 years, male
446.7
GTEX-145MH-2326-SM-5O9AW
50-59 years, male
443.2
GTEX-13FHP-2826-SM-5IJFW
50-59 years, male
436.9
GTEX-13VXU-0726-SM-5J2O7
50-59 years, male
434.3
GTEX-ZYFC-0126-SM-5GIEH
50-59 years, male
431.4
GTEX-U3ZH-1526-SM-4DXV1
30-39 years, male
430.6
GTEX-1212Z-0326-SM-5FQSJ
60-69 years, male
429.7
GTEX-111CU-1726-SM-5EGHM
50-59 years, male
427.9
GTEX-139T6-1226-SM-5IFFC
50-59 years, male
427.7
GTEX-13OVL-0426-SM-5IFG6
50-59 years, male
426.7
GTEX-S7SE-0326-SM-4AT5Q
50-59 years, male
424.3
GTEX-147JS-0126-SM-5S2TW
60-69 years, male
421.1
GTEX-139TS-1726-SM-5IJG5
60-69 years, male
420.5
GTEX-11DXZ-2126-SM-59881
50-59 years, male
420.1
GTEX-SUCS-1326-SM-4DM5T
70-79 years, male
417.9
GTEX-RM2N-1326-SM-48FCW
50-59 years, male
415.4
GTEX-SNMC-1026-SM-4DM7K
20-29 years, male
414.4
GTEX-WHSB-2126-SM-4M1XF
50-59 years, male
410.8
GTEX-11EI6-2226-SM-5EGJM
60-69 years, male
410.1
GTEX-XBEC-0126-SM-4GIDT
50-59 years, male
410.1
GTEX-Y9LG-1726-SM-4VBQE
30-39 years, male
408.8
GTEX-YF7O-2026-SM-4W1YE
50-59 years, male
407.5
GTEX-13OW6-0126-SM-5IJGM
50-59 years, male
406.8
GTEX-VJYA-1426-SM-4KL1Y
60-69 years, male
405.0
GTEX-XBED-2026-SM-4AT5D
60-69 years, male
404.5
GTEX-11LCK-2326-SM-5HL53
30-39 years, male
403.3
GTEX-Y111-2426-SM-4TT23
50-59 years, male
401.8
GTEX-111VG-1926-SM-5GIDO
60-69 years, male
400.0
GTEX-T8EM-0126-SM-4DM5R
40-49 years, male
399.5
GTEX-11NSD-1026-SM-5N9BE
20-29 years, male
399.3
GTEX-ZYT6-2726-SM-5GICP
30-39 years, male
398.8
GTEX-XGQ4-2026-SM-4AT6G
50-59 years, male
398.3
GTEX-V1D1-2126-SM-4JBH4
50-59 years, male
396.6
GTEX-R55C-1426-SM-48FED
40-49 years, male
395.0
GTEX-R55E-0726-SM-48FCZ
20-29 years, male
394.5
GTEX-144GM-0426-SM-5Q5C8
20-29 years, male
393.6
GTEX-XMK1-2026-SM-4B65K
40-49 years, male
392.9
GTEX-OIZH-2126-SM-3NB1P
50-59 years, male
392.0
GTEX-QLQW-1026-SM-447A9
30-39 years, male
391.7
GTEX-S3XE-1526-SM-4AD5A
50-59 years, male
390.4
GTEX-1399R-1626-SM-5P9GG
30-39 years, male
390.2
GTEX-11P7K-1026-SM-5HL6Y
30-39 years, male
389.8
GTEX-145MO-0126-SM-5S2QU
60-69 years, male
389.6
GTEX-ZUA1-2726-SM-59HLJ
40-49 years, male
388.7
GTEX-117YW-1526-SM-5EGGP
50-59 years, male
387.9
GTEX-XPT6-1626-SM-4B655
20-29 years, male
387.4
GTEX-S33H-0126-SM-4AD62
30-39 years, male
387.3
GTEX-O5YT-2126-SM-3MJGD
20-29 years, male
385.1
GTEX-U3ZM-1626-SM-4DXSK
40-49 years, male
384.4
GTEX-ZVZP-2226-SM-57WBF
50-59 years, male
384.4
GTEX-13O21-1226-SM-5J2MK
50-59 years, male
384.0
GTEX-111YS-2026-SM-5EGGL
60-69 years, male
383.7
GTEX-YB5E-1926-SM-5IFIG
40-49 years, male
383.6
GTEX-14ABY-0626-SM-5Q5C9
50-59 years, male
383.5
GTEX-Y5V6-1726-SM-4VDSZ
60-69 years, male
383.2
GTEX-11GS4-2026-SM-5N9CP
60-69 years, male
382.6
GTEX-145LT-0426-SM-5LUAP
40-49 years, male
382.6
GTEX-WFG8-1926-SM-4LVM1
20-29 years, male
382.0
GTEX-14753-0626-SM-5Q5CY
60-69 years, male
381.5
GTEX-ZDTT-2026-SM-5K7TY
60-69 years, male
380.5
GTEX-ZA64-1626-SM-5CVME
20-29 years, male
380.2
GTEX-Y8E4-2226-SM-5LU94
40-49 years, male
377.9
GTEX-117XS-2026-SM-5GID1
60-69 years, male
376.6
GTEX-11TT1-2226-SM-5GU6B
20-29 years, male
376.1
GTEX-ZVTK-0126-SM-57WDG
20-29 years, male
375.2
GTEX-12ZZY-0126-SM-5LZV2
60-69 years, male
374.1
GTEX-11NV4-1726-SM-5N9FC
60-69 years, male
373.2
GTEX-14A6H-2326-SM-5Q5B5
30-39 years, male
373.0
GTEX-12C56-1426-SM-5FQSW
20-29 years, male
372.9
GTEX-Q2AI-1226-SM-48U14
40-49 years, male
371.6
GTEX-RN64-2326-SM-48FDW
50-59 years, male
371.4
GTEX-WH7G-1926-SM-4LVMM
40-49 years, male
371.1
GTEX-11TUW-2226-SM-5EQL9
60-69 years, male
371.0
GTEX-13N2G-0126-SM-5N9DV
60-69 years, male
370.7
GTEX-11ZUS-2726-SM-5FQUA
30-39 years, male
370.3
GTEX-WOFM-1126-SM-4OOSB
20-29 years, male
369.6
GTEX-11OF3-1826-SM-5987N
60-69 years, male
367.5
GTEX-13NZB-2026-SM-5MR4M
30-39 years, male
367.5
GTEX-X5EB-2026-SM-4E3KA
40-49 years, male
362.1
GTEX-QV31-1126-SM-4R1K4
30-39 years, male
361.6
GTEX-144GL-0726-SM-5LU4P
50-59 years, male
361.5
GTEX-PW2O-1426-SM-48TCD
20-29 years, male
359.7
GTEX-PLZ5-1526-SM-3P5ZX
50-59 years, male
359.6
GTEX-13112-0226-SM-5P9IV
50-59 years, male
358.2
GTEX-Q2AH-1526-SM-48TZG
40-49 years, male
357.4
GTEX-P4QS-2126-SM-3NMCF
60-69 years, male
357.2
GTEX-SNOS-1126-SM-4DM67
40-49 years, male
356.0
GTEX-13111-1526-SM-5EGJX
50-59 years, male
355.9
GTEX-QLQ7-1426-SM-4R1JX
60-69 years, male
355.8
GTEX-QV44-1726-SM-4R1KG
50-59 years, male
355.1
GTEX-13FLW-2126-SM-5N9FD
50-59 years, male
354.4
GTEX-OIZI-0126-SM-3NB13
40-49 years, male
354.4
GTEX-OOBJ-2126-SM-3NB1N
60-69 years, male
347.2
GTEX-REY6-0126-SM-48FDT
60-69 years, male
345.8
GTEX-11NUK-2626-SM-5A5MB
50-59 years, male
345.3
GTEX-QMRM-1526-SM-4R1K6
50-59 years, male
345.2
GTEX-RWSA-2426-SM-47JXR
40-49 years, male
345.2
GTEX-144GN-1626-SM-5Q5BU
50-59 years, male
344.7
GTEX-13N1W-2626-SM-5IJEP
70-79 years, male
344.3
GTEX-WK11-0326-SM-4OOS6
50-59 years, male
342.1
GTEX-S4Q7-1226-SM-4AD5I
20-29 years, male
341.9
GTEX-X261-2326-SM-4PQYU
50-59 years, male
341.0
GTEX-S95S-1126-SM-4B64E
60-69 years, male
340.6
GTEX-YEC3-1726-SM-5IFIK
50-59 years, male
340.0
GTEX-T6MN-2026-SM-4DM7L
50-59 years, male
339.6
GTEX-XLM4-1526-SM-4AT6D
60-69 years, male
339.2
GTEX-11ONC-2226-SM-5HL6D
60-69 years, male
336.7
GTEX-ZAB5-2426-SM-5CVMW
50-59 years, male
336.3
GTEX-U4B1-1526-SM-4DXSL
40-49 years, male
335.1
GTEX-YJ89-0626-SM-4TT3Z
60-69 years, male
334.0
GTEX-TKQ2-1526-SM-4DXUN
50-59 years, male
331.9
GTEX-11EQ8-1426-SM-5EGJR
60-69 years, male
331.3
GTEX-11O72-0726-SM-5P9GO
40-49 years, male
328.9
GTEX-RUSQ-2126-SM-47JXK
50-59 years, male
327.1
GTEX-OOBK-2126-SM-3LK5T
40-49 years, male
326.1
GTEX-12WSM-1326-SM-5GCP9
60-69 years, male
324.6
GTEX-V955-1926-SM-4KL1L
60-69 years, male
319.1
GTEX-1399Q-2826-SM-5IJEZ
40-49 years, male
316.7
GTEX-131XE-0426-SM-5IJF4
50-59 years, male
316.6
GTEX-WVLH-2626-SM-4MVNV
50-59 years, male
315.9
GTEX-X3Y1-2626-SM-4PQZI
40-49 years, male
314.5
GTEX-13NYB-2226-SM-5MR58
40-49 years, male
312.3
GTEX-UPJH-0126-SM-4IHLL
50-59 years, male
312.0
GTEX-QEG4-0126-SM-48TZE
30-39 years, male
310.2
GTEX-111FC-1926-SM-5GZYC
60-69 years, male
308.6
GTEX-13NZA-2526-SM-5IJFX
60-69 years, male
308.6
GTEX-12WSH-0326-SM-5GCNH
50-59 years, male
308.0
GTEX-N7MS-0126-SM-3TW8O
60-69 years, male
307.9
GTEX-OHPM-2126-SM-3LK75
50-59 years, male
306.6
GTEX-XQ3S-2726-SM-4BOP2
20-29 years, male
305.2
GTEX-R55D-0126-SM-48FEL
50-59 years, male
303.9
GTEX-13O1R-0726-SM-5IJEI
60-69 years, male
302.4
GTEX-11WQC-2326-SM-5EQKE
60-69 years, male
302.1
GTEX-WZTO-0326-SM-4PQYZ
40-49 years, male
301.6
GTEX-WFON-2026-SM-4LVMW
40-49 years, male
299.5
GTEX-S7PM-0626-SM-4AD4Q
60-69 years, male
298.3
GTEX-13FTW-1326-SM-5LZZD
40-49 years, male
296.0
GTEX-12WSI-2126-SM-5GCMV
50-59 years, male
295.0
GTEX-12696-0226-SM-5EGL3
60-69 years, male
294.3
GTEX-XPVG-2226-SM-4B65U
50-59 years, male
292.9
GTEX-1339X-1926-SM-5PNVP
40-49 years, male
288.1
GTEX-147F4-0626-SM-5LUAK
50-59 years, male
287.1
GTEX-12WSL-2326-SM-5DUXQ
50-59 years, male
277.6
GTEX-11WQK-2826-SM-5EQKH
50-59 years, male
277.4
GTEX-U8XE-0126-SM-4E3I3
30-39 years, male
276.8
GTEX-13OVH-0726-SM-5N9BU
70-79 years, male
272.0
GTEX-NFK9-0126-SM-3LK5H
40-49 years, male
270.4
GTEX-ZT9X-1426-SM-5DUX1
40-49 years, male
268.8
GTEX-ZAB4-0126-SM-5CVMG
40-49 years, male
268.3
GTEX-T5JC-0726-SM-4DM55
20-29 years, male
261.8
GTEX-QEG5-0126-SM-4R1JR
20-29 years, male
259.7
GTEX-13OW5-2526-SM-5L3I1
60-69 years, male
256.7
GTEX-U8T8-1126-SM-4DXUE
60-69 years, male
256.1
GTEX-Z93S-1726-SM-5HL8G
50-59 years, male
249.7
GTEX-XAJ8-1326-SM-47JYT
40-49 years, male
242.4
GTEX-P4QR-0226-SM-3NMCH
60-69 years, male
235.8
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.