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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 444.4
Min RPKM: 149.0
Std RPKM: 53.2
Median RPKM: 244.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
444.4
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
423.0
GTEX-1192X-2526-SM-59868
50-59 years, male
348.0
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
344.3
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
342.6
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
339.6
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
338.4
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
325.5
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
324.2
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
317.5
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
309.3
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
301.6
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
300.3
GTEX-117YX-0326-SM-5GICL
50-59 years, male
296.9
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
292.1
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
289.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
286.5
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
286.0
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
283.3
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
282.5
GTEX-13111-1426-SM-5DUW3
50-59 years, male
282.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
279.4
GTEX-1122O-1326-SM-5H11F
60-69 years, female
277.9
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
277.7
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
275.6
GTEX-13113-1226-SM-5EGHT
60-69 years, female
266.7
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
266.2
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
264.9
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
260.6
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
260.2
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
259.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
257.9
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
253.9
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
253.8
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
250.8
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
248.8
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
248.0
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
246.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
246.5
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
246.1
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
245.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
245.3
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
245.2
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
244.8
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
243.3
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
242.4
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
241.5
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
241.1
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
238.9
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
238.5
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
235.9
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
235.0
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
233.1
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
231.5
GTEX-111YS-1426-SM-5GID8
60-69 years, male
230.5
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
229.7
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
229.2
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
222.3
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
221.4
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
221.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
220.3
GTEX-13O61-1326-SM-5KM31
60-69 years, male
219.5
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
212.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
212.5
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
212.5
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
211.7
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
210.8
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
209.4
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
209.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
204.2
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
201.5
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
200.7
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
200.4
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
200.0
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
198.8
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
197.9
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
196.7
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
196.5
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
195.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
194.7
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
189.6
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
183.6
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
176.2
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
173.8
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
172.5
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
159.8
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
157.3
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
149.0
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.