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COLON - Expression summary
RNA expressioni
HPA:111.7TPM
GTEx:340.8RPKM
FANTOM5:288.3Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 111.7
overview Male, age 54 Sample 1
TPM: 136.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 65.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 27.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 168.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 103.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 330.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 72.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 33.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 131.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 31.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 75.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 118.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 159.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 340.8
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 467.7
Samples: 149

Max RPKM: 1573.1
Min RPKM: 106.4
Std RPKM: 241.8
Median RPKM: 411.7
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 1573.1
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 1428.0
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 1304.0
GTEX-WFG8-1726-SM-4LVM6 20-29 years, male 1155.5
GTEX-14BMU-1326-SM-5RQIH 20-29 years, female 1015.0
GTEX-YF7O-1626-SM-5IFII 50-59 years, male 949.4
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 897.8
GTEX-ZZ64-0826-SM-5E449 20-29 years, male 886.6
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 879.9
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 845.1
Show all
Colon - Transverse
RPKM: 244.4
Samples: 196

Max RPKM: 1006.1
Min RPKM: 13.4
Std RPKM: 214.6
Median RPKM: 154.9
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 1006.1
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 898.9
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 875.7
GTEX-13O61-1626-SM-5KM3T 60-69 years, male 851.4
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 844.1
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 822.4
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 725.7
GTEX-12WSJ-1526-SM-5GCNI 40-49 years, female 717.0
GTEX-11EQ9-1426-SM-5987G 30-39 years, male 698.4
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 671.5
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 288.3
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 312.8
FF:10014-101C5 62,83,84 years, mixed 288.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.