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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 1182.8
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 617.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 580.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1042.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 695.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1066
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 753.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1490.3
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1794.3
Min RPKM: 14.2
Std RPKM: 235.9
Median RPKM: 284.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1794.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
1049.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
1034.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
849.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
818.8
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
776.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
666.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
636.2
GTEX-QESD-2026-SM-447BI
20-29 years, male
633.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
578.8
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
554.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
486.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
472.9
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
472.4
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
472.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
454.7
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
438.4
GTEX-YECK-1926-SM-4W21H
60-69 years, male
429.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
418.8
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
418.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
414.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
408.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
407.8
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
406.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
406.6
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
396.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
396.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
388.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
386.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
386.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
382.7
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
371.8
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
369.4
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
358.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
356.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
355.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
353.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
350.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
348.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
341.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
336.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
332.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
327.5
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
324.0
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
323.5
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
316.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
308.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
308.3
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
304.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
302.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
300.2
GTEX-13112-1426-SM-5EGH8
50-59 years, male
299.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
297.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
296.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
294.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
294.2
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
294.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
293.5
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
287.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
284.4
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
282.3
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
281.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
280.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
279.9
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
278.6
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
273.6
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
265.2
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
262.0
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
258.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
246.5
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
244.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
226.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
222.2
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
221.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
217.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
217.4
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
196.7
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
193.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
187.7
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
185.7
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
175.5
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
174.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
170.2
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
167.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
167.4
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
158.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
155.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
148.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
146.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
140.8
GTEX-RU72-1426-SM-46MUF
50-59 years, female
137.6
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
135.9
GTEX-S33H-1626-SM-4AD68
30-39 years, male
120.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
118.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
114.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
114.4
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
114.2
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
110.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
108.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
106.2
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
106.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
101.7
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
87.3
GTEX-12696-0826-SM-5EGGE
60-69 years, male
87.1
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
80.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
79.0
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
76.2
GTEX-X261-1726-SM-4PQYT
50-59 years, male
73.0
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
70.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
68.0
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
66.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
66.0
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
62.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
62.3
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
59.4
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
58.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
50.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
48.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
14.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.