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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 9941.5
Min RPKM: 1.8
Std RPKM: 2616.6
Median RPKM: 2923.7
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
9941.5
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
9855.7
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
8092.7
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
8076.9
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
8040.2
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
7057.2
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
6623.4
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
6560.0
GTEX-11I78-2026-SM-5987C
50-59 years, female
6480.3
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
6369.2
GTEX-S341-1226-SM-4AD5S
40-49 years, female
6187.1
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
6064.0
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
5941.9
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
5926.4
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
5812.2
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
5554.9
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
5523.2
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
5460.6
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
5450.9
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
5410.2
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
5297.1
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
5281.0
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
5010.6
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
4852.7
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
4796.0
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
4783.5
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
4707.8
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
4655.0
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
4589.2
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
4311.1
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
4300.1
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
4170.6
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
4155.2
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
4066.5
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
4006.5
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
4005.5
GTEX-QCQG-1226-SM-48U23
50-59 years, female
3850.2
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
3821.7
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
3721.9
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
3695.9
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
3674.5
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
3667.9
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
3565.4
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
3561.7
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
3560.2
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
3497.8
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
3266.8
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
3019.4
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
2828.0
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
2797.4
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
2697.8
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
2646.7
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
2536.3
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
2294.5
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
2171.5
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
1698.5
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
1630.8
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
1475.2
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
1457.0
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
1412.9
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
1406.7
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
1397.7
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
1230.7
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
1030.9
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
632.6
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
492.5
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
434.9
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
273.4
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
231.3
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
80.3
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
76.0
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
56.8
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
55.2
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
36.3
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
35.1
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
31.4
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
26.7
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
25.2
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
18.3
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
18.2
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
16.9
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
13.2
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
12.8
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
12.6
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
10.8
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
10.1
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
10.0
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
9.9
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
7.2
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
6.9
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
6.1
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
5.9
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
3.9
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
3.6
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
3.1
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
1.8
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.