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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 9561.2
Min RPKM: 0.6
Std RPKM: 2190.6
Median RPKM: 8.8
GTEX-Y5LM-1826-SM-4VDT9
40-49 years, female
9561.2
GTEX-ZT9W-2126-SM-51MSF
50-59 years, male
8236.4
GTEX-11ZTS-3026-SM-5EQM7
60-69 years, female
7199.4
GTEX-ZPU1-2326-SM-57WEP
40-49 years, male
6555.7
GTEX-ZP4G-1926-SM-57WDZ
20-29 years, female
4911.3
GTEX-XV7Q-2426-SM-4BRV8
40-49 years, female
4278.4
GTEX-ZQG8-2126-SM-4YCF1
60-69 years, female
3609.9
GTEX-WFJO-2026-SM-4LVM3
30-39 years, male
2390.5
GTEX-13CF2-2426-SM-5LZYL
60-69 years, male
606.1
GTEX-ZA64-1726-SM-5CVMF
20-29 years, male
385.4
GTEX-1117F-3026-SM-5GZYU
60-69 years, female
373.1
GTEX-111FC-2926-SM-5GZY7
60-69 years, male
337.2
GTEX-WOFM-2126-SM-4OOSR
20-29 years, male
243.7
GTEX-ZC5H-2726-SM-5KLZW
40-49 years, female
104.1
GTEX-XMK1-2626-SM-4B65R
40-49 years, male
92.7
GTEX-ZXG5-2826-SM-5NQ8T
60-69 years, male
27.7
GTEX-1339X-2326-SM-5HL5B
40-49 years, male
26.2
GTEX-13OVI-2326-SM-5KM47
60-69 years, female
23.5
GTEX-12WSL-2126-SM-5GCNG
50-59 years, male
21.8
GTEX-13111-2326-SM-5LZUQ
50-59 years, male
18.9
GTEX-Y3I4-1926-SM-4TT8L
50-59 years, male
17.6
GTEX-YF7O-2226-SM-5CVN8
50-59 years, male
16.1
GTEX-X5EB-1726-SM-4E3J7
40-49 years, male
16.0
GTEX-11WQK-2926-SM-5EQKT
50-59 years, male
14.3
GTEX-11P81-2026-SM-5P9GT
30-39 years, female
12.3
GTEX-145ME-1626-SM-5RQI3
40-49 years, female
12.3
GTEX-ZE7O-2926-SM-51MSG
50-59 years, female
11.0
GTEX-13O21-1926-SM-5MR39
50-59 years, male
9.5
GTEX-Y5V6-2226-SM-4VDTC
60-69 years, male
8.8
GTEX-13NYC-2626-SM-5K7VN
60-69 years, male
8.2
GTEX-13113-1526-SM-5EGHV
60-69 years, female
7.9
GTEX-1314G-2026-SM-5LZUM
30-39 years, male
7.7
GTEX-1445S-2926-SM-5O993
60-69 years, male
7.7
GTEX-13JVG-2926-SM-5J2N9
60-69 years, male
7.3
GTEX-X15G-2126-SM-4PQZR
50-59 years, female
7.0
GTEX-X261-2426-SM-4PQZU
50-59 years, male
6.5
GTEX-146FR-1226-SM-5SIA7
60-69 years, female
6.4
GTEX-13OVL-2926-SM-5IFG3
50-59 years, male
6.0
GTEX-YB5K-1726-SM-5IFIZ
40-49 years, female
5.8
GTEX-11EQ9-2026-SM-5P9JI
30-39 years, male
5.6
GTEX-11TUW-2426-SM-5EQKB
60-69 years, male
5.2
GTEX-11P82-0926-SM-5986X
20-29 years, male
4.9
GTEX-12WSM-1826-SM-5BC64
60-69 years, male
4.8
GTEX-131XF-2826-SM-5EGKH
60-69 years, male
4.3
GTEX-XGQ4-2626-SM-4AT6B
50-59 years, male
4.0
GTEX-13NYB-2426-SM-5IFF4
40-49 years, male
3.9
GTEX-13QJC-2326-SM-5Q5CD
60-69 years, female
3.4
GTEX-11ZTT-2226-SM-5CVLP
60-69 years, female
3.0
GTEX-12WSN-2226-SM-5DUXT
40-49 years, male
2.7
GTEX-13VXT-1726-SM-5IFF5
20-29 years, female
2.4
GTEX-WYVS-2026-SM-4RGNS
40-49 years, female
2.4
GTEX-ZQUD-2126-SM-51MSY
30-39 years, male
2.2
GTEX-Y111-2626-SM-4TT24
50-59 years, male
1.2
GTEX-14B4R-1426-SM-5Q5CG
30-39 years, male
1.1
GTEX-11NV4-1926-SM-5N9D4
60-69 years, male
1.0
GTEX-X3Y1-1926-SM-4PQZO
40-49 years, male
0.8
GTEX-13G51-2426-SM-5LZY8
60-69 years, male
0.6
Show all
SALIVARY GLAND - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.