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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 98.3
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 73.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 73.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 124.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 81.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 162.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 145.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 194
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 397.8
Min RPKM: 13.8
Std RPKM: 59.0
Median RPKM: 107.9
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
397.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
327.2
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
268.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
210.9
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
206.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
202.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
200.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
196.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
194.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
193.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
187.9
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
187.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
186.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
186.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
184.2
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
176.6
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
170.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
168.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
166.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
162.1
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
160.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
158.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
153.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
153.5
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
153.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
152.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
151.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
150.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
150.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
149.3
GTEX-11ZUS-2526-SM-59872
30-39 years, male
148.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
144.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
143.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
135.2
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
135.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
132.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
130.9
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
130.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
129.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
127.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
124.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
124.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
122.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
121.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
121.2
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
120.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
120.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
120.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
119.7
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
119.5
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
118.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
116.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
116.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
116.0
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
115.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
113.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
112.7
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
110.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
108.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
107.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
107.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
107.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
106.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
105.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
105.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
104.8
GTEX-R53T-0326-SM-48FEC
50-59 years, female
104.3
GTEX-13113-1326-SM-5GCOI
60-69 years, female
103.9
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
103.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
103.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
101.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
100.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
99.5
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
99.4
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
99.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
98.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
97.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
97.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
97.0
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
96.5
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
94.8
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
91.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
88.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
86.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
86.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
83.9
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
83.5
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
80.6
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
80.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
74.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
72.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
72.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
69.6
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
67.7
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
66.3
GTEX-RU72-1426-SM-46MUF
50-59 years, female
66.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
62.6
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
59.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
59.3
GTEX-S33H-1626-SM-4AD68
30-39 years, male
56.4
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
54.9
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
54.3
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
50.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
49.2
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
45.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
44.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
44.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
44.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
42.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
41.5
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
41.2
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
38.2
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
37.4
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
33.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
23.5
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
21.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
19.8
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
16.6
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
13.8
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.