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COLON - Expression summary
RNA expressioni
HPA:57.6TPM
GTEx:37.4RPKM
FANTOM5:74.4Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 57.6
overview Male, age 54 Sample 1
TPM: 42.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 29.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 18.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 77
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 62.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 63.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 85
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 32.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 84.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 35.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 46.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 84.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 86
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 37.4
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 34.1
Samples: 149

Max RPKM: 132.5
Min RPKM: 5.3
Std RPKM: 22.1
Median RPKM: 28.2
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 132.5
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 109.0
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 104.8
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 104.1
GTEX-145LS-2926-SM-5O99G 60-69 years, female 93.8
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 92.8
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 86.5
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 86.3
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 75.3
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 75.0
Show all
Colon - Transverse
RPKM: 39.9
Samples: 196

Max RPKM: 415.2
Min RPKM: 5.7
Std RPKM: 47.7
Median RPKM: 26.2
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 415.2
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 376.3
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 235.0
GTEX-144GN-1126-SM-5LU33 50-59 years, male 192.0
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 149.6
GTEX-12WSJ-1526-SM-5GCNI 40-49 years, female 133.3
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 115.6
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 107.4
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 105.9
GTEX-Y3I4-1426-SM-4TT9C 50-59 years, male 104.7
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 74.4
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 48.6
FF:10014-101C5 62,83,84 years, mixed 74.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.