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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1233.8
Min RPKM: 1.3
Std RPKM: 323.4
Median RPKM: 285.5
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
1233.8
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
1196.5
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
1159.3
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
1150.8
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
1108.5
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
1092.6
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
1019.0
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
941.9
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
921.2
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
839.9
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
710.0
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
703.5
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
703.1
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
659.9
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
604.9
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
600.8
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
592.1
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
584.3
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
556.1
GTEX-S341-1226-SM-4AD5S
40-49 years, female
552.7
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
543.5
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
540.5
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
540.2
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
539.4
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
532.7
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
483.9
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
450.5
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
434.3
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
425.2
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
400.5
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
397.2
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
381.7
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
380.3
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
379.5
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
372.3
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
369.5
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
368.6
GTEX-11I78-2026-SM-5987C
50-59 years, female
365.8
GTEX-QCQG-1226-SM-48U23
50-59 years, female
360.2
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
337.9
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
319.1
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
315.9
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
307.4
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
306.7
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
299.2
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
292.2
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
286.9
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
286.5
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
284.5
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
254.4
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
251.0
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
250.4
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
245.8
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
242.6
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
240.7
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
228.7
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
226.2
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
209.5
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
188.3
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
163.8
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
156.7
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
153.9
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
137.2
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
119.2
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
91.3
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
83.9
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
78.3
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
62.8
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
61.9
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
45.7
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
44.1
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
39.1
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
37.4
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
35.0
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
34.4
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
25.2
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
24.4
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
22.8
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
18.1
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
17.4
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
12.8
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
11.7
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
11.3
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
11.2
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
9.3
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
9.0
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
7.1
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
7.1
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
7.0
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
6.3
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
4.7
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
4.7
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
4.6
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
3.4
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
1.9
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
1.3
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.