Fields »
ABOUTMENU
HELP
NEWS
SDHC
COLON - Expression summary
RNA expressioni
HPA:80.1TPM
GTEx:24.1RPKM
FANTOM5:93.8Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 80.1
overview Male, age 54 Sample 1
TPM: 76
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 86.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 93.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 105.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 94.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 90
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 100.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 62.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 60.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 77.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 70.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 68.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 54.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 24.1
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 20.5
Samples: 149

Max RPKM: 30.2
Min RPKM: 10.5
Std RPKM: 3.7
Median RPKM: 20.6
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 30.2
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 28.5
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 27.9
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 27.7
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 27.6
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 27.2
GTEX-13FTW-2126-SM-5K7YG 40-49 years, male 26.9
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 26.8
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 26.7
GTEX-WFG8-1726-SM-4LVM6 20-29 years, male 26.5
Show all
Colon - Transverse
RPKM: 26.8
Samples: 196

Max RPKM: 45.9
Min RPKM: 7.8
Std RPKM: 6.5
Median RPKM: 26.1
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 45.9
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 44.8
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 42.5
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 42.2
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 42.0
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 40.9
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 40.1
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 39.4
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 37.9
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 37.7
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 93.8
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 67.0
FF:10014-101C5 62,83,84 years, mixed 93.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.