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COLON - Expression summary
RNA expressioni
HPA:22.5TPM
GTEx:9.4RPKM
FANTOM5:34.0Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 22.5
overview Male, age 54 Sample 1
TPM: 19.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 17.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 23.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 17.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 17.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 22.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 30.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 22.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 21.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 32.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 24.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 25.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 15.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 9.4
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 8.5
Samples: 149

Max RPKM: 12.4
Min RPKM: 4.3
Std RPKM: 1.2
Median RPKM: 8.4
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 12.4
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 11.8
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 11.6
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 11.6
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 11.4
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 11.3
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 11.0
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 10.8
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 10.7
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 10.6
Show all
Colon - Transverse
RPKM: 10.0
Samples: 196

Max RPKM: 17.9
Min RPKM: 6.3
Std RPKM: 1.9
Median RPKM: 10.0
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 17.9
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 15.4
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 14.6
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 14.4
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 13.6
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 13.5
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 13.5
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 13.5
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 13.4
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 13.4
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 34.0
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 28.7
FF:10014-101C5 62,83,84 years, mixed 34.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.