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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 733.2
Min RPKM: 240.6
Std RPKM: 85.7
Median RPKM: 381.2
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
733.2
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
603.0
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
559.1
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
557.1
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
551.9
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
546.1
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
541.4
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
533.4
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
533.1
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
530.3
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
528.5
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
524.3
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
518.8
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
491.5
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
488.4
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
487.2
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
484.0
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
474.7
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
466.5
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
461.8
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
449.7
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
447.5
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
445.2
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
445.1
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
441.0
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
439.4
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
436.3
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
436.0
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
433.3
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
428.8
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
428.6
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
425.3
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
417.7
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
411.5
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
407.5
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
406.3
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
404.8
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
402.6
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
401.6
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
399.2
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
398.9
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
396.6
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
396.2
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
394.9
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
394.2
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
389.1
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
387.4
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
382.5
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
379.9
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
377.5
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
376.9
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
376.8
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
376.6
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
376.4
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
374.4
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
368.5
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
366.7
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
365.8
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
365.6
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
363.5
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
362.6
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
361.8
GTEX-QCQG-1226-SM-48U23
50-59 years, female
355.2
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
354.6
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
350.1
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
349.0
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
346.9
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
342.6
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
341.5
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
341.1
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
340.7
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
326.4
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
324.9
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
323.8
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
323.6
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
319.9
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
318.9
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
318.9
GTEX-S341-1226-SM-4AD5S
40-49 years, female
311.5
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
311.5
GTEX-11I78-2026-SM-5987C
50-59 years, female
310.6
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
310.3
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
310.3
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
307.3
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
305.4
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
304.5
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
300.3
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
299.9
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
299.7
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
297.9
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
291.5
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
289.9
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
287.5
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
282.2
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
277.1
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
240.6
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.