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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 637.2
Min RPKM: 130.6
Std RPKM: 101.0
Median RPKM: 277.9
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
637.2
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
551.3
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
527.8
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
516.0
GTEX-13O61-1326-SM-5KM31
60-69 years, male
500.7
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
466.9
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
458.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
439.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
435.8
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
429.6
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
415.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
414.4
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
412.8
GTEX-1192X-2526-SM-59868
50-59 years, male
409.6
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
409.3
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
409.3
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
399.4
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
394.9
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
392.6
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
391.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
385.4
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
366.2
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
343.3
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
340.9
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
338.5
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
333.2
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
332.5
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
331.5
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
331.0
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
330.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
318.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
305.0
GTEX-13113-1226-SM-5EGHT
60-69 years, female
304.1
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
303.0
GTEX-13111-1426-SM-5DUW3
50-59 years, male
297.2
GTEX-117YX-0326-SM-5GICL
50-59 years, male
296.9
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
296.1
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
296.1
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
294.3
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
287.3
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
284.8
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
284.7
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
278.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
278.4
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
277.4
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
275.4
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
273.2
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
270.7
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
269.7
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
267.3
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
267.1
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
261.1
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
255.4
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
252.4
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
252.3
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
249.1
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
247.2
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
244.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
244.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
242.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
241.7
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
241.7
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
237.9
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
237.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
233.7
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
229.7
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
227.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
224.6
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
222.6
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
218.9
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
218.0
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
207.8
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
204.5
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
199.5
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
197.8
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
194.9
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
193.4
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
191.3
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
182.8
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
181.0
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
173.2
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
171.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
168.2
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
167.9
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
157.3
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
156.2
GTEX-1122O-1326-SM-5H11F
60-69 years, female
153.0
GTEX-111YS-1426-SM-5GID8
60-69 years, male
130.6
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.