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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1609.0
Min RPKM: 261.9
Std RPKM: 268.7
Median RPKM: 640.4
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
1609.0
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
1385.3
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
1294.0
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
1241.9
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
1220.7
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
1162.1
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
1159.4
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
1138.5
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
1114.2
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
1066.4
GTEX-13O61-1326-SM-5KM31
60-69 years, male
1043.1
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
1031.3
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
1026.3
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
1023.1
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
1011.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
1008.0
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
978.3
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
963.2
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
955.4
GTEX-1192X-2526-SM-59868
50-59 years, male
905.0
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
904.3
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
886.4
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
865.9
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
860.7
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
844.3
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
841.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
836.9
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
836.8
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
821.6
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
807.7
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
799.5
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
786.5
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
777.7
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
766.0
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
735.8
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
716.7
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
701.8
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
693.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
674.5
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
671.8
GTEX-117YX-0326-SM-5GICL
50-59 years, male
666.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
666.1
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
651.6
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
649.4
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
631.5
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
625.3
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
622.7
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
617.3
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
615.4
GTEX-13113-1226-SM-5EGHT
60-69 years, female
615.2
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
614.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
605.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
603.5
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
597.5
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
590.1
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
588.5
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
588.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
588.3
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
586.1
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
580.4
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
561.9
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
561.3
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
552.6
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
548.5
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
545.0
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
536.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
534.9
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
530.5
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
520.5
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
516.8
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
515.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
502.4
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
482.4
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
477.2
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
457.0
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
452.1
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
440.1
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
424.5
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
424.1
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
413.2
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
398.3
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
373.6
GTEX-1122O-1326-SM-5H11F
60-69 years, female
350.0
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
347.4
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
329.0
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
319.1
GTEX-ZTSS-0926-SM-59865
40-49 years, male
286.4
GTEX-111YS-1426-SM-5GID8
60-69 years, male
261.9
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.