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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 842.2
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 160.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 251.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 362.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 294.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 602.1
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 349.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 442.3
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 711.3
Min RPKM: 143.4
Std RPKM: 99.5
Median RPKM: 299.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
711.3
GTEX-12696-0826-SM-5EGGE
60-69 years, male
647.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
530.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
519.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
496.5
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
472.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
467.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
464.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
462.5
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
451.3
GTEX-RN64-1826-SM-48FDV
50-59 years, male
449.3
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
447.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
439.5
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
437.4
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
431.7
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
427.5
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
422.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
421.8
GTEX-X261-1726-SM-4PQYT
50-59 years, male
415.1
GTEX-QEL4-1226-SM-447A4
50-59 years, male
414.8
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
401.2
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
400.1
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
393.3
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
389.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
384.9
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
383.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
382.9
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
379.4
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
356.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
354.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
353.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
353.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
347.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
345.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
345.6
GTEX-S33H-1626-SM-4AD68
30-39 years, male
344.5
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
343.3
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
340.8
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
338.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
338.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
337.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
334.1
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
331.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
327.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
325.6
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
322.0
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
319.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
315.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
311.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
309.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
308.8
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
308.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
306.6
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
305.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
304.9
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
303.8
GTEX-13112-1426-SM-5EGH8
50-59 years, male
301.0
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
300.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
299.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
299.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
299.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
296.9
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
295.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
293.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
292.5
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
284.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
283.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
282.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
282.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
282.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
281.6
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
281.4
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
281.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
280.6
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
277.8
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
275.2
GTEX-Q734-0326-SM-48U15
40-49 years, female
274.0
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
272.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
270.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
266.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
264.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
261.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
260.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
259.0
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
258.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
253.8
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
247.8
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
247.2
GTEX-P78B-1326-SM-3P611
40-49 years, female
245.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
243.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
243.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
240.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
235.1
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
234.8
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
233.6
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
233.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
227.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
226.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
225.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
222.7
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
220.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
211.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
205.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
204.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
192.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
191.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
185.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
183.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
182.0
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
178.1
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
174.6
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
173.9
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
163.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
162.1
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
161.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
161.0
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
159.1
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
152.2
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
143.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.