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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2223.9
Min RPKM: 663.6
Std RPKM: 300.0
Median RPKM: 1153.7
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
2223.9
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
1974.9
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
1953.2
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
1925.8
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
1773.5
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
1771.5
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
1762.9
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
1649.2
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
1627.7
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
1606.7
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
1599.3
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
1565.1
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
1539.4
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
1528.3
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
1481.1
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
1479.5
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
1478.8
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
1445.8
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
1392.0
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
1383.3
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
1365.5
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
1365.1
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
1358.5
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
1351.4
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
1350.8
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
1346.1
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
1343.9
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
1343.7
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
1330.8
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
1330.6
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
1324.4
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
1321.1
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
1316.0
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
1295.5
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
1282.0
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
1263.6
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
1259.5
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
1257.6
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
1256.9
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
1247.2
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
1246.2
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
1228.3
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
1226.1
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
1203.1
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
1196.0
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
1186.7
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
1173.5
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
1162.5
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
1145.0
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
1141.7
GTEX-QCQG-1226-SM-48U23
50-59 years, female
1130.4
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
1123.8
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
1118.8
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
1117.2
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
1108.6
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
1106.2
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
1104.7
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
1075.8
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
1073.2
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
1069.8
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
1054.0
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
1050.3
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
1050.0
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
1044.6
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
1027.8
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
1005.5
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
1000.6
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
999.7
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
998.4
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
998.0
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
997.0
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
993.0
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
983.1
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
973.0
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
963.7
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
959.8
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
945.0
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
923.8
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
920.7
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
918.3
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
914.3
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
910.6
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
907.0
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
884.6
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
877.7
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
877.4
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
876.8
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
861.4
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
853.4
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
823.6
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
812.9
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
794.5
GTEX-11I78-2026-SM-5987C
50-59 years, female
794.4
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
788.3
GTEX-S341-1226-SM-4AD5S
40-49 years, female
755.4
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
663.6
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.