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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1710.4
Min RPKM: 371.3
Std RPKM: 320.8
Median RPKM: 806.1
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
1710.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
1698.3
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
1669.5
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
1668.8
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
1572.6
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
1489.5
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
1439.2
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
1323.2
GTEX-13O61-1326-SM-5KM31
60-69 years, male
1310.1
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
1307.9
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
1283.4
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
1265.8
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
1242.7
GTEX-1192X-2526-SM-59868
50-59 years, male
1240.3
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
1226.3
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
1212.9
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
1146.1
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
1117.8
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
1117.5
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
1115.0
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
1106.6
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
1059.2
GTEX-117YX-0326-SM-5GICL
50-59 years, male
1035.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
1004.5
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
984.6
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
960.7
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
946.4
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
943.2
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
937.3
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
934.7
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
923.8
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
901.4
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
883.2
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
878.0
GTEX-13111-1426-SM-5DUW3
50-59 years, male
877.7
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
877.4
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
854.8
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
854.7
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
851.5
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
833.5
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
826.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
822.5
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
821.8
GTEX-13113-1226-SM-5EGHT
60-69 years, female
808.8
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
803.5
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
763.8
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
761.6
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
758.0
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
757.5
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
744.2
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
742.6
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
741.4
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
737.6
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
732.3
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
715.4
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
711.7
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
707.8
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
703.4
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
697.9
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
696.5
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
689.1
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
687.3
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
667.4
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
664.7
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
663.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
659.4
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
658.0
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
657.0
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
653.2
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
642.8
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
640.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
608.3
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
600.5
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
590.9
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
563.7
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
562.9
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
546.8
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
544.8
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
522.5
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
513.8
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
470.1
GTEX-1122O-1326-SM-5H11F
60-69 years, female
444.5
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
437.2
GTEX-ZTSS-0926-SM-59865
40-49 years, male
413.1
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
406.5
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
403.7
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
388.3
GTEX-111YS-1426-SM-5GID8
60-69 years, male
371.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.