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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 955.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 819.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 865.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 926.8
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 919.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1222.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 816.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1177.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 698.8
Min RPKM: 110.5
Std RPKM: 102.7
Median RPKM: 302.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
698.8
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
678.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
647.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
634.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
613.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
559.9
GTEX-QEL4-1226-SM-447A4
50-59 years, male
488.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
466.1
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
453.5
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
445.3
GTEX-12696-0826-SM-5EGGE
60-69 years, male
433.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
432.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
428.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
426.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
425.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
421.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
415.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
414.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
414.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
406.4
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
405.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
383.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
378.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
378.8
GTEX-RU72-1426-SM-46MUF
50-59 years, female
376.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
374.0
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
373.8
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
370.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
370.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
369.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
365.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
363.2
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
362.2
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
358.7
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
352.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
352.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
351.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
348.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
348.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
346.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
345.8
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
344.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
343.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
341.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
338.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
336.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
335.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
335.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
334.4
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
333.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
333.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
331.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
330.6
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
327.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
315.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
315.7
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
306.6
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
306.1
GTEX-R53T-0326-SM-48FEC
50-59 years, female
304.8
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
302.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
301.6
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
300.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
300.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
299.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
296.6
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
296.0
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
292.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
289.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
288.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
287.6
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
286.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
281.4
GTEX-1399T-0826-SM-5IFES
60-69 years, male
280.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
276.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
275.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
274.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
274.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
273.2
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
271.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
266.4
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
263.2
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
258.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
257.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
257.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
256.5
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
254.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
254.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
253.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
252.3
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
250.8
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
250.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
250.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
249.5
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
249.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
248.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
247.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
246.7
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
244.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
241.8
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
233.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
232.3
GTEX-11ZUS-2526-SM-59872
30-39 years, male
232.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
231.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
227.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
226.6
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
225.0
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
224.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
221.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
221.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
214.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
210.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
210.5
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
198.3
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
191.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
188.4
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
187.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
184.1
GTEX-11GSP-0626-SM-5986T
60-69 years, female
144.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
110.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.