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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 853.2
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 651.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 563.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 779.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 633.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 819.7
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 707.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 907.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 381.7
Min RPKM: 29.1
Std RPKM: 66.5
Median RPKM: 206.2
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
381.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
381.7
GTEX-R53T-0326-SM-48FEC
50-59 years, female
358.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
357.2
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
323.7
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
316.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
315.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
314.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
313.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
309.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
309.1
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
304.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
304.3
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
302.6
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
300.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
295.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
287.2
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
286.4
GTEX-YECK-1926-SM-4W21H
60-69 years, male
279.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
276.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
269.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
266.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
266.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
262.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
257.4
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
256.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
251.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
251.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
251.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
250.7
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
250.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
249.1
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
247.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
243.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
242.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
241.7
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
240.8
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
239.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
235.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
235.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
232.1
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
231.8
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
230.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
227.6
GTEX-1399T-0826-SM-5IFES
60-69 years, male
227.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
227.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
225.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
225.2
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
224.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
222.9
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
218.3
GTEX-RN64-1826-SM-48FDV
50-59 years, male
217.8
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
216.2
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
215.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
212.6
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
211.1
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
211.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
210.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
208.8
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
206.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
206.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
204.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
204.1
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
201.8
GTEX-12696-0826-SM-5EGGE
60-69 years, male
201.7
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
201.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
200.1
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
196.2
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
196.1
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
195.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
193.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
193.5
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
191.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
185.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
185.0
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
184.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
183.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
183.4
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
180.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
180.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
178.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
174.9
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
173.7
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
173.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
172.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
171.4
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
171.0
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
167.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
164.2
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
163.9
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
159.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
158.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
157.2
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
151.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
150.1
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
146.7
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
146.5
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
146.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
146.1
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
145.8
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
145.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
140.9
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
135.2
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
133.8
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
132.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
130.3
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
126.7
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
119.5
GTEX-X261-1726-SM-4PQYT
50-59 years, male
116.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
114.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
111.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
110.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
110.1
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
108.3
GTEX-S32W-1926-SM-4AD63
50-59 years, female
100.5
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
97.6
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
94.5
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
93.3
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
29.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.