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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1400.3
Min RPKM: 92.7
Std RPKM: 300.6
Median RPKM: 490.0
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
1400.3
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
1397.7
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
1275.3
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
1143.4
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
1124.7
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
1112.4
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
1104.2
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
1061.5
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
1060.4
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
1003.9
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
970.4
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
951.0
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
950.0
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
898.1
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
891.5
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
866.8
GTEX-QCQG-1226-SM-48U23
50-59 years, female
783.7
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
776.4
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
770.8
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
752.7
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
739.5
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
737.6
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
725.8
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
719.9
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
698.5
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
673.0
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
656.0
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
654.1
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
647.9
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
642.5
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
627.4
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
619.0
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
601.7
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
595.9
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
592.7
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
592.6
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
579.9
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
579.4
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
574.3
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
565.2
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
563.1
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
563.1
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
547.3
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
530.1
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
530.0
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
529.5
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
510.8
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
494.6
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
485.4
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
466.1
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
448.9
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
447.3
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
443.9
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
432.1
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
431.5
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
426.2
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
411.1
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
405.2
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
403.3
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
402.4
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
393.1
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
390.5
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
384.7
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
373.5
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
364.6
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
361.4
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
346.8
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
345.1
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
344.2
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
319.9
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
315.8
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
309.1
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
306.2
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
302.0
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
293.4
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
282.5
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
269.1
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
264.2
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
263.9
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
252.3
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
250.6
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
243.5
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
240.3
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
238.7
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
237.3
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
233.8
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
212.6
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
197.1
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
191.9
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
181.0
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
149.5
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
126.3
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
120.9
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
118.6
GTEX-S341-1226-SM-4AD5S
40-49 years, female
112.1
GTEX-11I78-2026-SM-5987C
50-59 years, female
92.7
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.