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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 651
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 373.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 270.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 366.8
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 336.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 569.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 354.6
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 509
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1014.4
Min RPKM: 166.6
Std RPKM: 159.5
Median RPKM: 515.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
1014.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
1001.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
874.5
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
859.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
833.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
828.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
820.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
808.4
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
784.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
771.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
769.7
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
768.3
GTEX-11ZUS-2526-SM-59872
30-39 years, male
751.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
746.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
734.0
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
709.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
705.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
703.5
GTEX-YECK-1926-SM-4W21H
60-69 years, male
694.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
690.8
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
688.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
685.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
680.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
679.3
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
673.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
672.4
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
660.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
655.7
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
655.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
652.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
648.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
642.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
641.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
640.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
638.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
633.6
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
629.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
625.8
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
622.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
620.9
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
607.4
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
601.3
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
593.0
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
580.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
580.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
578.1
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
577.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
573.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
553.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
551.6
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
550.3
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
548.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
543.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
540.2
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
531.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
531.2
GTEX-Q734-0326-SM-48U15
40-49 years, female
524.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
521.9
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
521.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
515.6
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
509.1
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
508.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
503.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
503.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
501.1
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
500.7
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
500.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
498.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
491.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
491.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
490.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
489.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
485.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
485.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
484.6
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
472.0
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
469.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
467.6
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
449.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
449.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
446.9
GTEX-P78B-1326-SM-3P611
40-49 years, female
437.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
437.1
GTEX-13112-1426-SM-5EGH8
50-59 years, male
432.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
432.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
429.2
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
423.1
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
421.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
420.5
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
413.4
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
412.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
408.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
406.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
400.3
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
399.9
GTEX-S32W-1926-SM-4AD63
50-59 years, female
396.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
393.1
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
388.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
387.8
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
386.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
382.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
380.2
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
371.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
367.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
366.4
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
365.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
363.9
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
362.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
357.8
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
347.8
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
343.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
331.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
318.2
GTEX-R53T-0326-SM-48FEC
50-59 years, female
313.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
300.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
284.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
266.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
230.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
166.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.