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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 200.5
Min RPKM: 80.5
Std RPKM: 27.6
Median RPKM: 141.5
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
200.5
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
199.7
GTEX-1122O-1326-SM-5H11F
60-69 years, female
197.4
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
190.9
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
188.0
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
183.2
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
179.6
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
175.6
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
173.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
173.9
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
173.7
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
173.0
GTEX-ZTSS-0926-SM-59865
40-49 years, male
172.8
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
168.8
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
167.8
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
167.1
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
166.2
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
165.9
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
165.7
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
164.3
GTEX-111YS-1426-SM-5GID8
60-69 years, male
163.8
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
161.9
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
161.6
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
160.6
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
160.4
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
158.9
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
158.5
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
157.7
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
154.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
152.7
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
152.7
GTEX-13O61-1326-SM-5KM31
60-69 years, male
150.3
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
150.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
149.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
149.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
146.3
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
146.3
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
146.1
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
144.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
144.1
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
143.8
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
142.4
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
142.1
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
141.6
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
141.5
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
139.5
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
139.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
138.9
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
138.4
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
137.9
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
137.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
136.0
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
134.7
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
133.8
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
131.1
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
131.0
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
130.9
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
129.3
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
128.8
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
128.7
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
128.1
GTEX-1192X-2526-SM-59868
50-59 years, male
127.5
GTEX-117YX-0326-SM-5GICL
50-59 years, male
127.4
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
127.1
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
126.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
125.5
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
125.0
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
124.4
GTEX-13113-1226-SM-5EGHT
60-69 years, female
124.3
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
121.9
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
121.1
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
117.8
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
110.8
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
107.3
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
106.9
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
106.0
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
105.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
102.0
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
101.0
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
100.5
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
99.3
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
98.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
98.7
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
95.8
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
93.4
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
85.6
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
84.1
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
80.5
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.