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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 402.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 58.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 58.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 173.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 170.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 338.7
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 170
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 284.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 458.1
Min RPKM: 96.6
Std RPKM: 52.2
Median RPKM: 220.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
458.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
416.3
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
376.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
312.0
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
310.6
GTEX-S33H-1626-SM-4AD68
30-39 years, male
304.7
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
301.7
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
301.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
299.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
290.6
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
289.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
283.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
281.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
280.9
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
273.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
271.5
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
270.1
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
270.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
269.4
GTEX-RN64-1826-SM-48FDV
50-59 years, male
266.2
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
264.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
263.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
260.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
260.6
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
260.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
256.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
255.2
GTEX-RU72-1426-SM-46MUF
50-59 years, female
255.1
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
255.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
252.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
246.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
246.1
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
246.1
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
245.0
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
244.0
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
243.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
241.4
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
241.2
GTEX-X261-1726-SM-4PQYT
50-59 years, male
240.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
240.5
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
239.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
237.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
237.6
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
237.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
236.5
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
236.4
GTEX-S32W-1926-SM-4AD63
50-59 years, female
235.9
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
233.8
GTEX-11GSP-0626-SM-5986T
60-69 years, female
231.7
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
231.1
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
229.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
228.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
227.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
227.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
226.7
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
223.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
222.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
221.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
220.3
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
220.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
219.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
217.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
217.5
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
217.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
216.7
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
214.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
213.9
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
213.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
211.7
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
211.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
210.4
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
210.0
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
207.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
207.0
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
206.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
203.8
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
203.7
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
201.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
200.3
GTEX-QESD-2026-SM-447BI
20-29 years, male
199.2
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
198.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
196.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
196.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
196.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
194.6
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
194.5
GTEX-Q734-0326-SM-48U15
40-49 years, female
193.5
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
190.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
190.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
190.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
187.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
187.3
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
187.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
185.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
184.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
183.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
183.1
GTEX-11ZUS-2526-SM-59872
30-39 years, male
180.4
GTEX-13112-1426-SM-5EGH8
50-59 years, male
179.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
178.6
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
178.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
177.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
177.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
177.3
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
177.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
176.3
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
170.7
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
168.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
167.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
164.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
164.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
154.4
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
153.9
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
152.1
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
151.6
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
148.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
133.0
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
118.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
96.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.