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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1012.5
Min RPKM: 162.3
Std RPKM: 173.6
Median RPKM: 427.2
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
1012.5
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
814.1
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
804.4
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
741.6
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
730.8
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
713.6
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
711.2
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
694.6
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
693.5
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
691.7
GTEX-13O61-1326-SM-5KM31
60-69 years, male
690.2
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
690.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
682.0
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
678.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
659.3
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
627.8
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
622.5
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
618.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
612.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
589.7
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
568.7
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
566.1
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
566.1
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
562.1
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
557.0
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
530.9
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
529.9
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
523.3
GTEX-1192X-2526-SM-59868
50-59 years, male
491.9
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
480.0
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
476.6
GTEX-117YX-0326-SM-5GICL
50-59 years, male
469.2
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
466.5
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
464.4
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
462.8
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
459.6
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
457.2
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
449.7
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
441.6
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
441.1
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
440.0
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
431.1
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
430.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
428.8
GTEX-13111-1426-SM-5DUW3
50-59 years, male
425.7
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
406.7
GTEX-13113-1226-SM-5EGHT
60-69 years, female
402.1
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
397.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
389.1
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
388.0
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
375.4
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
371.4
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
371.4
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
364.3
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
361.5
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
360.9
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
349.1
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
347.9
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
345.6
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
340.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
340.7
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
335.3
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
334.3
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
322.6
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
321.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
317.0
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
314.8
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
309.6
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
303.9
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
303.2
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
303.0
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
299.7
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
293.8
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
283.7
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
282.6
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
270.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
259.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
242.8
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
240.6
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
235.2
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
233.9
GTEX-1122O-1326-SM-5H11F
60-69 years, female
216.5
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
211.0
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
203.2
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
193.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
182.2
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
173.7
GTEX-111YS-1426-SM-5GID8
60-69 years, male
162.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.