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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 113.4
Min RPKM: 29.3
Std RPKM: 17.2
Median RPKM: 58.6
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
113.4
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
105.2
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
104.7
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
101.8
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
95.9
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
95.0
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
91.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
91.2
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
90.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
84.4
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
81.7
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
79.8
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
78.4
GTEX-13O61-1326-SM-5KM31
60-69 years, male
77.9
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
77.8
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
77.2
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
76.0
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
75.8
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
75.1
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
73.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
72.8
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
72.6
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
71.8
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
70.5
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
69.7
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
69.0
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
67.9
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
67.3
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
66.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
65.7
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
65.2
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
64.4
GTEX-13111-1426-SM-5DUW3
50-59 years, male
64.3
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
62.8
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
61.6
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
61.3
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
61.1
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
60.3
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
59.9
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
59.6
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
59.5
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
59.0
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
58.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
58.7
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
58.5
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
58.3
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
58.2
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
58.0
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
56.8
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
56.5
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
56.2
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
55.9
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
55.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
54.8
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
54.7
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
54.6
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
53.4
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
52.8
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
52.6
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
52.5
GTEX-1122O-1326-SM-5H11F
60-69 years, female
52.2
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
52.2
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
52.0
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
49.7
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
49.6
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
49.1
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
49.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
48.3
GTEX-111YS-1426-SM-5GID8
60-69 years, male
47.8
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
47.6
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
46.8
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
46.6
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
46.4
GTEX-1192X-2526-SM-59868
50-59 years, male
45.7
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
45.6
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
44.6
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
44.4
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
43.4
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
43.0
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
42.3
GTEX-117YX-0326-SM-5GICL
50-59 years, male
40.8
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
40.2
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
39.1
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
39.1
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
39.0
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
38.8
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
37.4
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
29.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.