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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 24.7
Min RPKM: 4.9
Std RPKM: 2.9
Median RPKM: 10.9
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
24.7
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
18.7
GTEX-1192X-2526-SM-59868
50-59 years, male
16.4
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
16.3
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
16.1
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
15.7
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
15.4
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
15.3
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
15.2
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
14.4
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
14.4
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
14.3
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
13.9
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
13.7
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
13.6
GTEX-ZTSS-0926-SM-59865
40-49 years, male
13.3
GTEX-13O61-1326-SM-5KM31
60-69 years, male
13.2
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
13.0
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
12.9
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
12.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
12.5
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
12.2
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
12.2
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
11.9
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
11.9
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
11.8
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
11.7
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
11.7
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
11.6
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
11.6
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
11.6
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
11.6
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
11.6
GTEX-1122O-1326-SM-5H11F
60-69 years, female
11.5
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
11.5
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
11.4
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
11.4
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
11.3
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
11.2
GTEX-13111-1426-SM-5DUW3
50-59 years, male
11.1
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
11.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
11.0
GTEX-13113-1226-SM-5EGHT
60-69 years, female
11.0
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
11.0
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
10.9
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
10.6
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
10.6
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
10.2
GTEX-111YS-1426-SM-5GID8
60-69 years, male
10.1
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
10.0
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
10.0
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
10.0
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
9.8
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
9.8
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
9.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
9.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
9.5
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
9.5
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
9.3
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
9.2
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
9.1
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
9.1
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
9.0
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
9.0
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
8.9
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
8.9
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
8.8
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
8.7
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
8.7
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
8.7
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
8.5
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
8.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
8.2
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
8.2
GTEX-117YX-0326-SM-5GICL
50-59 years, male
8.1
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
8.1
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
8.1
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
8.0
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
8.0
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
7.9
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
7.9
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
7.7
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
7.7
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
7.6
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
7.5
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
7.2
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
6.5
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
4.9
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.