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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 19.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 7.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 12.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 29.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 22.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 25
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 63.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 19
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 68.4
Min RPKM: 5.6
Std RPKM: 9.6
Median RPKM: 16.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
68.4
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
45.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
45.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
40.9
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
40.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
39.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
34.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
31.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
31.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
30.9
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
29.9
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
29.7
GTEX-1399T-0826-SM-5IFES
60-69 years, male
28.4
GTEX-13112-1426-SM-5EGH8
50-59 years, male
28.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
28.0
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
27.8
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
27.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
27.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
27.2
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
27.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
26.6
GTEX-QESD-2026-SM-447BI
20-29 years, male
26.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
25.9
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
25.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
25.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
25.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
24.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
24.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
24.4
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
24.4
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
24.4
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
24.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
24.1
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
24.0
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
23.4
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
23.0
GTEX-11GSP-0626-SM-5986T
60-69 years, female
22.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
22.4
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
21.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
21.6
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
21.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
21.0
GTEX-X261-1726-SM-4PQYT
50-59 years, male
20.4
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
19.9
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
19.9
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
19.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
19.0
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
19.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
19.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
18.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
18.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
18.6
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
18.4
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
18.1
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
18.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
17.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
17.1
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
16.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
16.5
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
16.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
16.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
15.9
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
15.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
15.7
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
15.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
15.5
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
15.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
14.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
14.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
14.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
14.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
14.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
14.4
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
14.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
14.3
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
14.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
13.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
13.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
13.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
13.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
13.5
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
13.3
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
13.3
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
12.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
12.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
12.5
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
12.4
GTEX-12696-0826-SM-5EGGE
60-69 years, male
12.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
12.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
11.9
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
11.8
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
11.7
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
11.5
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
11.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
11.4
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
11.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
10.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
10.6
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
10.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
9.9
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
9.8
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
9.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
9.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
9.2
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
9.2
GTEX-QEL4-1226-SM-447A4
50-59 years, male
9.1
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
9.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
8.7
GTEX-Q734-0326-SM-48U15
40-49 years, female
8.5
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
7.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
7.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
7.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
7.3
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
7.1
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
7.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
6.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
6.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
6.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
5.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.