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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 8570.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 2661.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 2685.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 5863.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 4756.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 8197.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 6107.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 9556.4
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 6464.4
Min RPKM: 381.6
Std RPKM: 1087.5
Median RPKM: 2302.9
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
6464.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
5499.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
5407.2
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
5180.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
4963.6
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
4766.8
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
4588.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
4511.7
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
4332.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
4219.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
4183.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
4128.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
4107.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
4104.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
3874.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
3793.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
3618.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
3567.1
GTEX-1399T-0826-SM-5IFES
60-69 years, male
3551.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
3434.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
3358.5
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
3333.7
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
3238.2
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
3174.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
3128.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
3083.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
2981.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
2977.1
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
2973.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
2967.8
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
2937.5
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
2887.0
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
2851.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
2847.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
2831.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
2831.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
2814.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
2695.6
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
2684.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
2647.8
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
2646.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
2621.2
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
2592.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
2555.1
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
2549.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
2537.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
2521.2
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
2498.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
2496.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
2491.0
GTEX-13113-1326-SM-5GCOI
60-69 years, female
2451.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
2450.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
2449.0
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
2436.6
GTEX-RU72-1426-SM-46MUF
50-59 years, female
2387.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
2362.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
2355.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
2338.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
2310.1
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
2302.9
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
2276.1
GTEX-13112-1426-SM-5EGH8
50-59 years, male
2230.6
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
2230.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
2225.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
2217.8
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
2216.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
2204.1
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
2188.4
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
2184.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
2162.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
2159.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
2069.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
2057.1
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
2041.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
2028.8
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
2017.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
2005.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
2001.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
1976.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
1976.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
1944.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
1944.4
GTEX-11ZUS-2526-SM-59872
30-39 years, male
1944.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
1934.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
1930.9
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
1864.3
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
1847.9
GTEX-S33H-1626-SM-4AD68
30-39 years, male
1846.8
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
1832.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
1830.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
1786.1
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
1752.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
1746.3
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
1734.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
1734.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
1728.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
1715.9
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
1655.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
1602.6
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
1562.6
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
1550.6
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
1457.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
1395.2
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
1378.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
1350.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
1323.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
1247.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
1244.3
GTEX-S32W-1926-SM-4AD63
50-59 years, female
1231.5
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
1153.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
1150.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
1148.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
1063.6
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
1003.9
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
993.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
914.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
858.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
553.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
381.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.