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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 859.2
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1354.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 1274.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1069.4
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 1011.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1065
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 1390.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1971
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1996.5
Min RPKM: 2.6
Std RPKM: 319.4
Median RPKM: 368.7
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1996.5
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
1493.6
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
1363.7
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
1100.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
1072.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
1024.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
927.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
882.5
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
873.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
825.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
824.5
GTEX-13112-1426-SM-5EGH8
50-59 years, male
811.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
790.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
783.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
776.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
753.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
746.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
739.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
729.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
726.6
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
711.0
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
699.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
648.3
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
614.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
604.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
602.6
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
599.9
GTEX-P78B-1326-SM-3P611
40-49 years, female
596.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
573.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
548.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
548.0
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
537.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
531.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
527.3
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
524.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
513.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
507.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
503.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
496.3
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
494.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
494.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
493.6
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
490.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
487.0
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
473.7
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
455.9
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
441.8
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
419.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
416.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
411.9
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
408.1
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
407.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
404.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
403.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
402.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
399.2
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
398.4
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
398.4
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
397.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
368.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
363.6
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
360.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
358.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
352.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
347.4
GTEX-11ZUS-2526-SM-59872
30-39 years, male
344.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
331.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
330.2
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
326.0
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
325.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
316.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
311.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
307.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
292.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
288.3
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
282.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
279.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
274.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
268.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
249.9
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
246.3
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
241.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
241.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
231.8
GTEX-X261-1726-SM-4PQYT
50-59 years, male
222.0
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
220.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
215.6
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
210.5
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
209.1
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
206.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
205.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
200.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
196.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
172.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
153.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
153.2
GTEX-QEL4-1226-SM-447A4
50-59 years, male
151.5
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
149.8
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
149.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
139.2
GTEX-Q734-0326-SM-48U15
40-49 years, female
131.3
GTEX-12696-0826-SM-5EGGE
60-69 years, male
127.5
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
119.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
117.5
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
114.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
110.3
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
89.0
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
70.9
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
60.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
57.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
52.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
42.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
31.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
15.0
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
12.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
10.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
6.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
5.6
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
2.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.