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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 577.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1413.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 1180.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1176.9
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 986.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 747.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 819.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1236.4
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 948.5
Min RPKM: 7.6
Std RPKM: 161.9
Median RPKM: 237.9
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
948.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
788.0
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
721.9
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
636.6
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
520.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
486.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
484.4
GTEX-11GSP-0626-SM-5986T
60-69 years, female
482.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
474.5
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
472.4
GTEX-RN64-1826-SM-48FDV
50-59 years, male
458.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
450.2
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
439.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
437.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
435.2
GTEX-1399T-0826-SM-5IFES
60-69 years, male
429.1
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
428.8
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
423.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
415.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
414.0
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
402.1
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
395.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
394.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
389.6
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
387.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
379.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
373.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
372.7
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
363.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
362.4
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
350.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
347.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
347.0
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
345.6
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
344.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
339.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
336.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
336.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
334.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
333.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
330.5
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
328.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
328.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
323.1
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
320.2
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
308.6
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
307.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
303.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
301.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
300.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
294.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
288.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
286.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
268.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
268.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
266.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
250.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
245.2
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
242.1
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
237.9
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
236.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
233.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
224.1
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
216.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
215.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
214.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
208.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
208.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
207.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
199.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
197.9
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
196.6
GTEX-RU72-1426-SM-46MUF
50-59 years, female
196.5
GTEX-11ZUS-2526-SM-59872
30-39 years, male
195.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
194.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
189.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
188.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
186.7
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
186.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
184.5
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
184.4
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
180.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
178.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
167.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
163.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
154.1
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
151.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
148.7
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
145.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
143.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
139.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
138.9
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
137.7
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
133.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
122.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
114.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
114.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
113.9
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
113.8
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
113.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
111.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
111.1
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
105.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
96.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
94.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
86.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
79.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
66.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
65.3
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
57.7
GTEX-S33H-1626-SM-4AD68
30-39 years, male
50.6
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
46.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
40.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
32.4
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
18.2
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
16.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
9.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
8.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
7.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.