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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 399.8
Min RPKM: 0.3
Std RPKM: 118.8
Median RPKM: 134.2
GTEX-S341-1226-SM-4AD5S
40-49 years, female
399.8
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
391.1
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
381.1
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
351.7
GTEX-11I78-2026-SM-5987C
50-59 years, female
347.4
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
322.9
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
320.7
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
317.3
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
316.2
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
310.3
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
306.9
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
303.4
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
295.1
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
291.6
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
287.7
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
285.9
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
281.7
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
278.5
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
273.9
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
271.1
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
268.4
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
257.7
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
256.8
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
253.9
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
250.7
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
245.7
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
245.7
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
238.8
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
227.0
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
225.0
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
223.4
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
222.6
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
220.3
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
220.0
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
205.5
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
205.3
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
203.4
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
196.4
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
196.1
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
194.0
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
179.9
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
175.1
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
173.6
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
173.4
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
166.0
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
162.3
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
140.5
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
135.9
GTEX-QCQG-1226-SM-48U23
50-59 years, female
132.6
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
131.6
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
131.0
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
130.4
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
129.3
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
124.3
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
122.1
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
115.4
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
114.9
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
111.5
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
109.6
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
87.8
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
85.4
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
73.3
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
71.7
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
63.1
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
55.8
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
55.7
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
54.4
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
50.8
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
44.7
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
44.4
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
42.4
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
38.2
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
23.8
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
19.0
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
9.9
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
3.7
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
2.1
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
2.0
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
1.8
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
1.6
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
1.4
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
1.4
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
1.2
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
1.1
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
1.1
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
0.9
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
0.9
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
0.8
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
0.8
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
0.7
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
0.7
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
0.5
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
0.5
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
0.4
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
0.3
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
0.3
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.