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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 758.5
Min RPKM: 132.4
Std RPKM: 126.9
Median RPKM: 342.6
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
758.5
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
677.3
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
626.0
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
603.7
GTEX-1192X-2526-SM-59868
50-59 years, male
589.6
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
584.6
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
580.4
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
538.2
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
529.3
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
518.9
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
505.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
497.9
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
495.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
492.1
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
491.5
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
490.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
479.6
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
460.0
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
458.8
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
455.3
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
445.2
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
445.0
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
445.0
GTEX-13O61-1326-SM-5KM31
60-69 years, male
443.3
GTEX-117YX-0326-SM-5GICL
50-59 years, male
437.8
GTEX-13111-1426-SM-5DUW3
50-59 years, male
435.2
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
424.1
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
418.9
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
415.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
409.8
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
407.6
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
407.2
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
402.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
393.2
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
390.5
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
388.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
381.5
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
364.0
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
356.4
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
355.8
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
353.7
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
345.8
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
343.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
342.9
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
342.3
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
336.4
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
329.9
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
323.1
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
319.5
GTEX-13113-1226-SM-5EGHT
60-69 years, female
315.3
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
314.9
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
314.9
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
309.7
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
308.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
300.1
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
298.8
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
298.0
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
296.2
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
295.8
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
295.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
291.1
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
289.4
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
287.2
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
284.2
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
283.3
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
271.2
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
270.8
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
269.3
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
267.1
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
267.1
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
262.5
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
260.4
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
239.8
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
238.6
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
235.8
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
221.8
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
220.6
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
212.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
209.2
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
195.7
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
189.3
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
184.0
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
178.1
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
178.0
GTEX-ZTSS-0926-SM-59865
40-49 years, male
177.2
GTEX-1122O-1326-SM-5H11F
60-69 years, female
162.0
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
154.2
GTEX-111YS-1426-SM-5GID8
60-69 years, male
132.4
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.