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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 455.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 144.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 214.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 372
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 361.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 680.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 307
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 418.6
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 622.9
Min RPKM: 104.5
Std RPKM: 82.7
Median RPKM: 231.3
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
622.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
478.6
GTEX-S32W-1926-SM-4AD63
50-59 years, female
464.6
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
436.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
430.9
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
410.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
407.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
399.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
350.5
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
350.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
348.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
347.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
341.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
337.1
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
328.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
327.6
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
326.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
323.7
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
314.0
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
307.9
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
307.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
306.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
305.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
303.3
GTEX-QESD-2026-SM-447BI
20-29 years, male
300.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
297.6
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
296.5
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
292.7
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
283.8
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
280.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
280.8
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
280.5
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
280.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
275.5
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
275.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
273.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
272.3
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
266.2
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
263.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
263.6
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
263.0
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
260.8
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
260.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
259.1
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
255.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
255.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
253.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
251.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
244.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
243.6
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
243.2
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
240.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
240.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
239.7
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
237.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
237.2
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
236.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
235.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
231.4
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
231.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
229.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
227.7
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
227.1
GTEX-13112-1426-SM-5EGH8
50-59 years, male
226.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
225.6
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
225.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
222.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
221.7
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
220.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
219.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
219.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
218.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
215.0
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
214.9
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
214.8
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
214.0
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
211.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
210.6
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
209.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
208.9
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
207.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
204.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
203.3
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
203.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
202.4
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
201.8
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
200.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
198.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
196.3
GTEX-13113-1326-SM-5GCOI
60-69 years, female
191.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
191.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
191.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
188.6
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
184.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
183.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
182.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
182.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
182.1
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
179.4
GTEX-11GSP-0626-SM-5986T
60-69 years, female
168.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
167.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
166.5
GTEX-Q734-0326-SM-48U15
40-49 years, female
165.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
161.4
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
160.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
158.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
157.4
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
156.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
155.2
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
141.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
138.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
131.2
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
125.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
125.3
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
122.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
121.0
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
119.2
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
107.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
104.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.