We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 305
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 540.6
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 289.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 441.8
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 281.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 198.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 409.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 603.3
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 272.0
Min RPKM: 3.2
Std RPKM: 63.1
Median RPKM: 109.8
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
272.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
251.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
241.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
236.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
232.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
228.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
226.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
223.9
GTEX-R53T-0326-SM-48FEC
50-59 years, female
221.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
219.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
217.2
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
211.7
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
209.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
201.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
197.2
GTEX-QESD-2026-SM-447BI
20-29 years, male
194.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
192.2
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
190.6
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
188.9
GTEX-11GSP-0626-SM-5986T
60-69 years, female
188.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
187.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
183.8
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
182.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
177.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
177.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
177.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
176.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
176.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
173.4
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
171.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
170.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
163.2
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
162.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
161.2
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
154.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
151.1
GTEX-13112-1426-SM-5EGH8
50-59 years, male
150.1
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
148.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
143.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
138.4
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
137.6
GTEX-1399T-0826-SM-5IFES
60-69 years, male
136.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
135.5
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
134.7
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
133.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
131.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
129.8
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
127.6
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
127.5
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
126.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
125.6
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
120.2
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
118.1
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
117.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
116.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
116.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
115.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
114.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
113.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
109.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
106.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
105.5
GTEX-RN64-1826-SM-48FDV
50-59 years, male
105.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
101.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
101.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
100.5
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
98.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
98.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
97.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
95.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
94.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
94.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
93.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
93.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
92.2
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
88.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
86.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
85.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
85.6
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
83.4
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
82.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
81.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
79.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
79.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
78.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
78.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
72.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
72.1
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
70.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
68.5
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
67.5
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
66.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
65.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
65.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
64.6
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
63.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
62.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
61.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
58.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
57.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
50.0
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
48.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
48.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
44.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
38.8
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
38.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
38.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
34.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
30.4
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
28.4
GTEX-12696-0826-SM-5EGGE
60-69 years, male
27.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
23.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
21.9
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
18.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
17.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
15.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
12.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
5.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
3.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.