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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 4191.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 6227
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 3389.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 5410
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 4867.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 5278.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 4548.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 8538.5
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 4787.0
Min RPKM: 161.9
Std RPKM: 936.4
Median RPKM: 1403.5
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
4787.0
GTEX-QESD-2026-SM-447BI
20-29 years, male
4550.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
4333.1
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
3384.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
3323.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
3220.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
3152.3
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
3146.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
3108.6
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
3050.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
2989.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
2948.6
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
2877.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
2782.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
2741.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
2700.0
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
2637.1
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
2542.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
2498.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
2487.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
2410.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
2320.0
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
2283.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
2280.6
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
2265.8
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
2242.8
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
2222.7
GTEX-1399T-0826-SM-5IFES
60-69 years, male
2188.0
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
2182.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
2133.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
2110.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
2046.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
1991.0
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
1973.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
1890.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
1872.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
1849.8
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
1849.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
1832.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
1805.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
1805.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
1756.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
1707.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1677.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
1613.0
GTEX-13113-1326-SM-5GCOI
60-69 years, female
1609.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
1589.5
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
1586.6
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
1560.6
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
1532.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
1511.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
1496.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
1453.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
1449.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
1431.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
1421.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
1418.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
1407.2
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
1405.7
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
1403.5
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
1385.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
1358.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
1345.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
1330.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
1294.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
1266.5
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
1256.4
GTEX-11GSP-0626-SM-5986T
60-69 years, female
1233.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
1225.3
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
1221.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
1182.8
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
1155.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
1145.0
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
1144.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
1129.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
1077.5
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
991.1
GTEX-P78B-1326-SM-3P611
40-49 years, female
990.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
968.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
966.1
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
961.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
941.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
940.6
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
930.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
865.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
824.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
815.1
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
793.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
792.0
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
788.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
780.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
772.5
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
760.2
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
758.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
737.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
733.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
731.8
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
694.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
688.9
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
663.3
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
645.5
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
626.5
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
618.4
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
605.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
565.2
GTEX-X261-1726-SM-4PQYT
50-59 years, male
549.2
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
532.0
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
531.5
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
519.8
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
516.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
492.5
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
454.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
408.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
376.9
GTEX-S33H-1626-SM-4AD68
30-39 years, male
303.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
302.0
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
299.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
285.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
161.9
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.