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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 65.7
Min RPKM: 13.6
Std RPKM: 8.4
Median RPKM: 23.8
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
65.7
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
54.1
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
44.1
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
44.0
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
37.1
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
36.7
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
35.7
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
35.1
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
34.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
34.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
32.8
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
32.5
GTEX-13O61-1326-SM-5KM31
60-69 years, male
32.2
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
31.6
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
31.4
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
31.4
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
30.6
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
30.3
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
29.7
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
29.6
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
29.4
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
29.2
GTEX-1192X-2526-SM-59868
50-59 years, male
28.9
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
28.4
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
28.1
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
28.0
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
27.7
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
27.5
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
27.3
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
27.3
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
27.0
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
26.8
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
26.6
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
26.6
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
26.5
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
26.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
25.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
25.4
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
25.0
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
24.5
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
24.4
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
24.3
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
24.3
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
24.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
23.6
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
23.5
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
23.3
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
23.2
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
22.9
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
22.0
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
21.6
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
21.5
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
21.4
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
21.3
GTEX-ZTSS-0926-SM-59865
40-49 years, male
21.3
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
21.0
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
21.0
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
20.7
GTEX-13113-1226-SM-5EGHT
60-69 years, female
20.5
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
20.4
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
20.4
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
20.2
GTEX-13111-1426-SM-5DUW3
50-59 years, male
19.5
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
19.3
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
19.3
GTEX-1122O-1326-SM-5H11F
60-69 years, female
19.0
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
18.9
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
18.6
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
18.5
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
18.3
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
18.1
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
18.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
17.9
GTEX-111YS-1426-SM-5GID8
60-69 years, male
17.8
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
17.8
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
17.7
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
17.1
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
17.0
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
16.9
GTEX-117YX-0326-SM-5GICL
50-59 years, male
16.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
16.5
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
16.2
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
16.1
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
15.6
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
15.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
14.9
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
14.9
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
13.6
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.