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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 475.1
Min RPKM: 169.3
Std RPKM: 53.7
Median RPKM: 294.0
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
475.1
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
441.8
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
395.2
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
371.5
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
370.3
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
368.4
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
367.4
GTEX-11I78-2026-SM-5987C
50-59 years, female
366.3
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
359.6
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
359.5
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
355.4
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
354.1
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
354.1
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
351.8
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
350.9
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
349.5
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
349.4
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
347.1
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
347.1
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
346.9
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
344.6
GTEX-QCQG-1226-SM-48U23
50-59 years, female
344.1
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
342.2
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
338.5
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
337.4
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
337.4
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
336.3
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
335.7
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
330.0
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
327.7
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
327.5
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
325.1
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
323.4
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
321.6
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
314.1
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
310.7
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
310.0
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
307.9
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
306.2
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
306.0
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
305.8
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
303.8
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
299.4
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
299.0
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
298.3
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
295.9
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
295.3
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
295.0
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
293.0
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
291.4
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
291.3
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
291.1
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
290.1
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
289.9
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
288.0
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
288.0
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
286.6
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
282.5
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
280.4
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
279.1
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
277.7
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
276.9
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
275.7
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
274.6
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
272.2
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
269.0
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
268.8
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
267.2
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
264.9
GTEX-S341-1226-SM-4AD5S
40-49 years, female
259.6
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
259.1
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
254.3
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
253.0
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
253.0
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
252.7
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
251.4
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
251.3
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
250.3
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
250.1
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
245.8
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
245.8
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
244.1
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
243.8
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
242.7
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
236.7
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
233.8
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
230.3
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
226.6
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
225.1
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
217.7
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
214.9
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
213.7
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
195.8
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
195.5
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
182.2
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
169.3
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.