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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 245.9
Min RPKM: 96.4
Std RPKM: 30.5
Median RPKM: 154.1
GTEX-1192X-2526-SM-59868
50-59 years, male
245.9
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
228.0
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
224.0
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
222.8
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
208.5
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
203.9
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
202.8
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
198.6
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
198.3
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
198.1
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
198.0
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
193.8
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
189.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
184.6
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
184.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
183.9
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
178.9
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
178.8
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
178.1
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
178.1
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
177.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
176.4
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
175.9
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
175.6
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
174.4
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
173.3
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
171.5
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
171.0
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
170.8
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
169.9
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
169.4
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
168.7
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
168.4
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
167.3
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
167.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
165.3
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
165.1
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
164.9
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
163.7
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
163.7
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
163.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
162.9
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
160.7
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
154.3
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
153.9
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
153.2
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
152.8
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
151.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
150.2
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
148.3
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
147.5
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
146.0
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
145.0
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
142.8
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
141.4
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
141.0
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
140.8
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
137.8
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
137.7
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
137.2
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
137.0
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
137.0
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
136.1
GTEX-13111-1426-SM-5DUW3
50-59 years, male
135.5
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
134.9
GTEX-1122O-1326-SM-5H11F
60-69 years, female
133.7
GTEX-111YS-1426-SM-5GID8
60-69 years, male
133.6
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
132.6
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
130.5
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
128.6
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
127.8
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
127.7
GTEX-117YX-0326-SM-5GICL
50-59 years, male
127.2
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
126.8
GTEX-ZTSS-0926-SM-59865
40-49 years, male
125.9
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
125.6
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
125.6
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
125.5
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
124.9
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
122.1
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
120.8
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
118.2
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
116.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
114.8
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
107.7
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
105.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
97.6
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
96.4
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.