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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 60.3
Min RPKM: 14.6
Std RPKM: 12.1
Median RPKM: 28.7
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
60.3
GTEX-ZTSS-0926-SM-59865
40-49 years, male
58.7
GTEX-111YS-1426-SM-5GID8
60-69 years, male
58.5
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
56.8
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
55.7
GTEX-1122O-1326-SM-5H11F
60-69 years, female
55.6
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
55.0
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
54.6
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
53.7
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
53.1
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
52.3
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
51.7
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
50.6
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
50.5
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
47.9
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
47.8
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
47.1
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
45.5
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
45.0
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
43.8
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
43.0
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
42.8
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
42.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
40.0
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
39.5
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
39.0
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
38.7
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
38.7
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
38.5
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
37.9
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
37.5
GTEX-13113-1226-SM-5EGHT
60-69 years, female
35.9
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
35.0
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
33.8
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
33.3
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
32.9
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
32.3
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
32.1
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
31.8
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
31.1
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
30.7
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
29.2
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
29.1
GTEX-1192X-2526-SM-59868
50-59 years, male
29.0
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
28.5
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
28.4
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
28.0
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
28.0
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
27.7
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
27.5
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
27.4
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
27.4
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
27.3
GTEX-13O61-1326-SM-5KM31
60-69 years, male
26.9
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
26.9
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
26.8
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
26.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
26.2
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
25.9
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
25.6
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
25.3
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
25.0
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
24.9
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
24.9
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
24.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
24.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
24.4
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
24.1
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
23.8
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
23.2
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
22.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
22.5
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
22.2
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
22.1
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
21.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
21.5
GTEX-117YX-0326-SM-5GICL
50-59 years, male
21.0
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
21.0
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
20.9
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
20.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
19.9
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
19.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
18.9
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
18.6
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
18.1
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
16.3
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
15.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
14.6
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.