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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 581.3
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 381.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 269.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 359.4
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 567.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 672.7
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 345.9
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 2179.4
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2423.8
Min RPKM: 84.5
Std RPKM: 424.3
Median RPKM: 576.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
2423.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
2392.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
2325.8
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
1846.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
1337.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
1334.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
1334.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
1288.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
1245.7
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
1241.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
1216.1
GTEX-P78B-1326-SM-3P611
40-49 years, female
1187.6
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
1177.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
1156.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
1154.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
1141.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
1101.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
1048.9
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
1040.1
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
1018.2
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
1012.5
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
1000.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
1000.2
GTEX-R53T-0326-SM-48FEC
50-59 years, female
988.8
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
983.6
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
880.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
877.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
870.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
868.1
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
851.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
850.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
842.3
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
830.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
827.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
826.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
797.1
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
772.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
772.0
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
761.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
756.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
741.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
738.1
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
726.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
725.8
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
710.8
GTEX-X261-1726-SM-4PQYT
50-59 years, male
709.4
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
706.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
703.8
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
691.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
686.8
GTEX-QEL4-1226-SM-447A4
50-59 years, male
678.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
649.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
636.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
632.2
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
630.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
618.0
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
607.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
607.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
578.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
576.6
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
560.1
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
546.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
538.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
537.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
532.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
531.8
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
516.7
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
516.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
510.8
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
485.2
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
482.0
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
476.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
476.1
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
473.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
468.9
GTEX-S33H-1626-SM-4AD68
30-39 years, male
465.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
463.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
457.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
452.6
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
447.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
432.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
419.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
417.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
412.4
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
401.0
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
395.2
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
383.2
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
374.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
373.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
369.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
363.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
357.1
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
355.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
349.3
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
347.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
337.9
GTEX-11GSP-0626-SM-5986T
60-69 years, female
335.5
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
334.1
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
330.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
330.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
328.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
315.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
308.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
293.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
272.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
271.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
268.9
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
263.8
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
261.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
256.1
GTEX-13112-1426-SM-5EGH8
50-59 years, male
248.1
GTEX-RN64-1826-SM-48FDV
50-59 years, male
245.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
245.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
241.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
240.8
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
217.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
207.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
198.1
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
84.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.