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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 147.9
Min RPKM: 44.9
Std RPKM: 26.7
Median RPKM: 85.7
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
147.9
GTEX-ZTSS-0926-SM-59865
40-49 years, male
146.1
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
142.2
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
138.7
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
136.7
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
136.5
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
135.7
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
135.3
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
133.9
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
130.9
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
130.1
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
129.9
GTEX-1122O-1326-SM-5H11F
60-69 years, female
127.9
GTEX-111YS-1426-SM-5GID8
60-69 years, male
126.5
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
125.2
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
124.7
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
124.1
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
122.9
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
121.3
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
118.9
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
116.7
GTEX-13113-1226-SM-5EGHT
60-69 years, female
114.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
113.7
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
110.6
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
109.3
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
106.8
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
106.7
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
106.5
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
106.3
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
104.2
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
102.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
101.2
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
100.8
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
100.5
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
100.2
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
100.1
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
97.0
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
95.8
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
94.5
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
94.0
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
91.3
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
91.1
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
86.7
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
85.9
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
85.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
84.3
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
82.7
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
82.5
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
82.4
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
82.1
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
81.5
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
80.2
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
80.0
GTEX-13O61-1326-SM-5KM31
60-69 years, male
78.8
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
78.0
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
78.0
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
77.5
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
76.9
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
76.6
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
75.9
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
75.6
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
75.6
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
74.6
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
73.8
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
73.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
71.1
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
71.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
70.7
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
69.9
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
69.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
68.4
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
67.0
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
66.6
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
65.8
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
64.1
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
62.9
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
62.1
GTEX-1192X-2526-SM-59868
50-59 years, male
60.8
GTEX-117YX-0326-SM-5GICL
50-59 years, male
60.5
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
60.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
60.1
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
58.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
57.9
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
53.5
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
52.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
50.0
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
49.9
GTEX-13111-1426-SM-5DUW3
50-59 years, male
44.9
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.