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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 310.5
Min RPKM: 55.9
Std RPKM: 62.6
Median RPKM: 162.5
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
310.5
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
307.8
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
301.7
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
285.7
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
260.1
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
253.8
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
250.6
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
249.1
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
243.3
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
242.0
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
239.7
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
230.9
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
229.0
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
228.8
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
223.5
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
222.6
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
221.3
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
220.9
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
220.4
GTEX-QCQG-1226-SM-48U23
50-59 years, female
219.3
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
217.2
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
214.9
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
213.7
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
213.4
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
213.2
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
207.5
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
205.1
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
204.8
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
204.2
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
204.1
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
203.7
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
202.7
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
196.6
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
194.7
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
193.9
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
193.9
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
185.2
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
183.4
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
177.5
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
174.5
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
173.7
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
173.0
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
170.7
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
170.3
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
168.5
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
167.7
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
165.3
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
163.8
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
161.2
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
160.2
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
158.5
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
154.4
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
152.4
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
151.8
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
150.8
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
146.6
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
146.1
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
140.6
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
140.3
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
137.8
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
137.1
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
130.5
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
128.8
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
128.7
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
125.5
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
118.0
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
116.6
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
115.8
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
112.8
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
111.1
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
103.0
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
101.2
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
100.4
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
98.9
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
98.8
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
96.8
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
96.6
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
95.4
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
93.2
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
93.0
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
92.0
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
90.9
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
90.3
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
90.1
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
83.4
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
81.9
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
80.6
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
78.7
GTEX-11I78-2026-SM-5987C
50-59 years, female
76.5
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
76.4
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
76.1
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
70.2
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
66.2
GTEX-S341-1226-SM-4AD5S
40-49 years, female
58.3
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
58.1
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
55.9
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.