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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 289.7
Min RPKM: 83.7
Std RPKM: 40.2
Median RPKM: 147.7
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
289.7
GTEX-1192X-2526-SM-59868
50-59 years, male
264.2
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
262.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
260.2
GTEX-117YX-0326-SM-5GICL
50-59 years, male
250.5
GTEX-13111-1426-SM-5DUW3
50-59 years, male
227.1
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
226.7
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
222.4
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
199.8
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
195.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
193.3
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
187.3
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
183.6
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
181.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
173.1
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
172.5
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
170.1
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
170.1
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
169.9
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
169.8
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
168.7
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
168.6
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
166.7
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
164.5
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
164.0
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
163.5
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
157.4
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
156.7
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
155.7
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
154.7
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
154.5
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
154.4
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
153.8
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
153.3
GTEX-ZTSS-0926-SM-59865
40-49 years, male
152.6
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
152.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
151.6
GTEX-111YS-1426-SM-5GID8
60-69 years, male
151.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
149.9
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
148.9
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
148.8
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
148.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
148.2
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
148.0
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
147.3
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
147.3
GTEX-1122O-1326-SM-5H11F
60-69 years, female
145.9
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
143.9
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
142.3
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
142.1
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
141.5
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
141.4
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
140.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
136.7
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
134.5
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
133.9
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
133.5
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
132.9
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
131.0
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
130.9
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
130.8
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
129.7
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
129.5
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
128.3
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
126.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
125.2
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
122.3
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
120.9
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
119.7
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
119.4
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
118.5
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
117.8
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
116.2
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
116.1
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
113.8
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
112.7
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
110.8
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
110.5
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
109.7
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
106.8
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
106.6
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
105.3
GTEX-13O61-1326-SM-5KM31
60-69 years, male
105.2
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
103.2
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
101.3
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
93.6
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
91.6
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
83.7
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.