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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 208.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 170.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 44.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 53.9
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 104
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 335.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 46
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 365.3
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1234.1
Min RPKM: 12.7
Std RPKM: 287.2
Median RPKM: 184.8
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
1234.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
1217.9
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
1130.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
1124.8
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
1113.6
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
1095.7
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
961.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
960.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
789.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
739.4
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
717.0
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
704.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
647.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
634.3
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
620.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
580.9
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
580.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
568.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
567.1
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
557.6
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
544.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
532.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
522.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
513.4
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
499.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
455.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
407.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
406.6
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
402.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
382.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
355.4
GTEX-YECK-1926-SM-4W21H
60-69 years, male
351.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
350.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
348.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
348.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
341.2
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
336.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
335.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
328.6
GTEX-S32W-1926-SM-4AD63
50-59 years, female
327.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
322.8
GTEX-QEL4-1226-SM-447A4
50-59 years, male
310.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
309.2
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
308.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
295.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
290.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
267.6
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
264.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
257.5
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
252.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
243.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
241.1
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
236.6
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
230.1
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
227.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
220.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
219.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
194.8
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
191.1
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
184.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
184.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
180.0
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
170.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
165.5
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
161.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
160.1
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
157.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
151.0
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
143.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
142.9
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
136.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
133.5
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
132.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
131.4
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
130.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
129.6
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
124.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
123.0
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
122.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
118.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
117.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
115.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
110.5
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
107.5
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
104.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
101.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
101.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
100.4
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
99.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
91.1
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
89.5
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
80.5
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
74.6
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
73.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
70.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
68.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
66.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
64.9
GTEX-13112-1426-SM-5EGH8
50-59 years, male
64.5
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
64.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
63.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
61.4
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
58.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
56.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
55.1
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
53.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
51.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
47.0
GTEX-1399T-0826-SM-5IFES
60-69 years, male
41.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
39.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
37.8
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
36.7
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
36.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
30.5
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
19.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
19.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
15.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
14.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
12.7
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.